PDB entry 4kth

View 4kth on RCSB PDB site
Description: Structure of A/Hubei/1/2010 H5 HA
Class: viral protein
Keywords: hemagglutinin, VIRAL PROTEIN
Deposited on 2013-05-20, released 2013-11-27
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-11-27, with a file datestamp of 2013-11-22.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.236
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1087279]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot G2U0T8 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.05: d4ktha_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1087279]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4kthb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1087279]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot G2U0T8 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.05: d4kthc_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1087279]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot G2U0T8
      • conflict (174)
    Domains in SCOPe 2.05: d4kthd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1087279]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot G2U0T8 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.05: d4kthe_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1087279]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4kthf_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4kthA (A:)
adpgdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcs
vagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqi
ipknswsdheaslgvsaacpyqgkssffrnvvwlikkdnayptikkgynntnqedllvlw
gihhpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskingqsgridffwtilkpn
daihfesngnfiapeyaykivkkgdstimkseveygncntrcqtpigainssmpfhnihp
ltigecpkyvksnklvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4kthA (A:)
gdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
nswsdheaslgvsaacpyqgkssffrnvvwlikkdnayptikkgynntnqedllvlwgih
hpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskingqsgridffwtilkpndai
hfesngnfiapeyaykivkkgdstimkseveygncntrcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrnsp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4kthB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvrnlyd
kvrlqlkdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeissgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4kthB (B:)
ieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfeavgre
fnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvrnlydkvrlqlkdn
akelgngcfefyhkcdnecmesvrngtydypqyseearlkreeis

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4kthC (C:)
adpgdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcs
vagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqi
ipknswsdheaslgvsaacpyqgkssffrnvvwlikkdnayptikkgynntnqedllvlw
gihhpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskingqsgridffwtilkpn
daihfesngnfiapeyaykivkkgdstimkseveygncntrcqtpigainssmpfhnihp
ltigecpkyvksnklvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4kthC (C:)
gdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
nswsdheaslgvsaacpyqgkssffrnvvwlikkdnayptikkgynntnqedllvlwgih
hpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskingqsgridffwtilkpndai
hfesngnfiapeyaykivkkgdstimkseveygncntrcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrns

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4kthD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvrnlyd
kvrlqlkdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeissgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4kthD (D:)
iagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfea
vgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvrnlydkvrlq
lkdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeiss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4kthE (E:)
adpgdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcs
vagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqi
ipknswsdheaslgvsaacpyqgkssffrnvvwlikkdnayptikkgynntnqedllvlw
gihhpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskingqsgridffwtilkpn
daihfesngnfiapeyaykivkkgdstimkseveygncntrcqtpigainssmpfhnihp
ltigecpkyvksnklvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4kthE (E:)
gdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
nswsdheaslgvsaacpyqgkssffrnvvwlikkdnayptikkgynntnqedllvlwgih
hpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskingqsgridffwtilkpndai
hfesngnfiapeyaykivkkgdstimkseveygncntrcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrns

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4kthF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvrnlyd
kvrlqlkdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeissgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4kthF (F:)
ieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfeavgre
fnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvrnlydkvrlqlkdn
akelgngcfefyhkcdnecmesvrngtydypqyseearlkree