PDB entry 4kdo
View 4kdo on RCSB PDB site
Description: Crystal structure of the hemagglutinin of ferret-transmissble H5N1 virus in complex with human receptor analog LSTc
Class: viral protein
Keywords: homotrimer, virus attachment and membrane fusion, VIRAL PROTEIN
Deposited on
2013-04-25, released
2013-07-24
The last revision prior to the SCOPe 2.03 freeze date was dated
2013-09-04, with a file datestamp of
2013-08-30.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.239
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot Q6DQ33 (1-321)
- expression tag (0)
- engineered mutation (154)
- engineered mutation (220)
- engineered mutation (222)
- engineered mutation (315)
Domains in SCOPe 2.03: d4kdoa_ - Chain 'B':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot Q6DQ33 (1-321)
- expression tag (0)
- engineered mutation (154)
- engineered mutation (220)
- engineered mutation (222)
- engineered mutation (315)
Domains in SCOPe 2.03: d4kdoc_ - Chain 'D':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot Q6DQ33 (1-321)
- expression tag (0)
- engineered mutation (154)
- engineered mutation (220)
- engineered mutation (222)
- engineered mutation (315)
Domains in SCOPe 2.03: d4kdoe_ - Chain 'F':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Heterogens: SIA, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdoA (A:)
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdoC (C:)
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdoE (E:)
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp
- Chain 'F':
No sequence available.