PDB entry 4k8z

View 4k8z on RCSB PDB site
Description: KOD Polymerase in binary complex with dsDNA
Class: transferase/DNA
Keywords: DNA Polymerase, TRANSFERASE-DNA complex
Deposited on 2013-04-19, released 2013-06-26
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-06-26, with a file datestamp of 2013-06-21.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: 0.183
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Thermococcus kodakarensis [TaxId:69014]
    Gene: pol, pol TK0001, TK0001
    Database cross-references and differences (RAF-indexed):
    • Uniprot P77933 (0-405)
      • engineered mutation (140)
      • engineered mutation (142)
    • Uniprot P77933 (406-490)
    • Uniprot P77933 (491-End)
    Domains in SCOPe 2.04: d4k8za1, d4k8za2
  • Chain 'P':
    Compound: DNA (5'-d(*cp*gp*cp*gp*ap*ap*cp*tp*gp*cp*gp*(2da))-3')
  • Chain 'T':
    Compound: DNA (5'-d(*ap*ap*ap*tp*tp*cp*gp*cp*ap*gp*tp*tp*cp*gp*cp*g)-3')
  • Heterogens: NCO, EDO, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4k8zA (A:)
    mildtdyitedgkpvirifkkengefkieydrtfepyfyallkddsaieevkkitaerhg
    tvvtvkrvekvqkkflgrpvevwklyfthpqdvpairdkirehpavidiyeydipfakry
    lidkglvpmegdeelkmlafaiatlyhegeefaegpilmisyadeegarvitwknvdlpy
    vdvvsteremikrflrvvkekdpdvlityngdnfdfaylkkrceklginfalgrdgsepk
    iqrmgdrfavevkgrihfdlypvirrtinlptytleavyeavfgqpkekvyaeeittawe
    tgenlervarysmedakvtyelgkeflpmeaqlsrligqslwdvsrsstgnlvewfllrk
    ayernelapnkpdekelarrrqsyeggyvkeperglwenivyldfrslypsiiithnvsp
    dtlnregckeydvapqvghrfckdfpgfipsllgdlleerqkikkkmkatidpierklld
    yrqraikilansyygyygyararwyckecaesvtawgreyitmtikeieekygfkviysd
    tdgffatipgadaetvkkkameflkyinaklpgaleleyegfykrgffvtkkkyavidee
    gkittrgleivrrdwseiaketqarvleallkdgdvekavrivkevteklskyevppekl
    viheqitrdlkdykatgphvavakrlaargvkirpgtvisyivlkgsgrigdraipfdef
    dptkhkydaeyyienqvlpaverilrafgyrkedlryqktrqvglsawlkpkgt
    

    Sequence, based on observed residues (ATOM records): (download)
    >4k8zA (A:)
    mildtdyitedgkpvirifkkengefkieydrtfepyfyallkddsaieevkkitaerhg
    tvvtvkrvekvqkkflgrpvevwklyfthpqdvpairdkirehpavidiyeydipfakry
    lidkglvpmegdeelkmlafaiatlyhegeefaegpilmisyadeegarvitwknvdlpy
    vdvvsteremikrflrvvkekdpdvlityngdnfdfaylkkrceklginfalgrdgsepk
    iqrmgdrfavevkgrihfdlypvirrtinlptytleavyeavfgqpkekvyaeeittawe
    tgenlervarysmedakvtyelgkeflpmeaqlsrligqslwdvsrsstgnlvewfllrk
    ayernelapnkpdekelarrrqsyeggyvkeperglwenivyldfrslypsiiithnvsp
    dtlnregckeydvapqvghrfckdfpgfipsllgdlleerqkikkkmkatidpierklld
    yrqraikilansyygyygyararwyckecaesvtawgreyitmtikeieekygfkviysd
    tdgffatipgadaetvkkkameflkyinaklpgaleleyegfykrgffvtkkkyavidee
    gkittrgleivrrdwseiaketqarvleallkdgdvekavrivkevteklskyevppekl
    viheqitrdlkdykatgphvavakrlaargvkirpgtvisyivlkgsgrigdraipfdef
    dptkhkydaeyyienqvlpaverilrafgyrkedlr
    

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.