PDB entry 4k66
View 4k66 on RCSB PDB site
Description: Structure of an airborne transmissible avian influenza H5 hemagglutinin mutant from the influenza virus A/Indonesia/5/2005 complexed with avian receptor analog LSTa
Class: viral protein
Keywords: virus attachment, membrane fusion, VIRAL PROTEIN
Deposited on
2013-04-15, released
2013-05-22
The last revision prior to the SCOPe 2.05 freeze date was dated
2013-05-29, with a file datestamp of
2013-05-24.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.221
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A8HWY8 (1-320)
- expression tag (0)
- engineered mutation (103)
- engineered mutation (156)
- engineered mutation (222)
- engineered mutation (224)
Domains in SCOPe 2.05: d4k66a_ - Chain 'B':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4k66b_ - Chain 'C':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A8HWY8 (1-320)
- expression tag (0)
- engineered mutation (103)
- engineered mutation (156)
- engineered mutation (222)
- engineered mutation (224)
Domains in SCOPe 2.05: d4k66c_ - Chain 'D':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4k66d_ - Chain 'E':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A8HWY8 (1-320)
- expression tag (0)
- engineered mutation (103)
- engineered mutation (156)
- engineered mutation (222)
- engineered mutation (224)
Domains in SCOPe 2.05: d4k66e_ - Chain 'F':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4k66f_ - Chain 'G':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A8HWY8 (1-320)
- expression tag (0)
- engineered mutation (103)
- engineered mutation (156)
- engineered mutation (222)
- engineered mutation (224)
Domains in SCOPe 2.05: d4k66g_ - Chain 'H':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:400788]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4k66h_ - Heterogens: NAG
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66A (A:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66B (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66C (C:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66D (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66E (E:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66F (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66G (G:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>4k66H (H:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse