PDB entry 4k62

View 4k62 on RCSB PDB site
Description: Structure of an avian influenza H5 hemagglutinin from the influenza virus A/Indonesia/5/2005
Class: viral protein
Keywords: virus attachment, membrane fusion, VIRAL PROTEIN
Deposited on 2013-04-15, released 2013-05-22
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-05-22, with a file datestamp of 2013-05-17.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.238
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
    Domains in SCOPe 2.03: d4k62a_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
    Domains in SCOPe 2.03: d4k62c_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
    Domains in SCOPe 2.03: d4k62e_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
    Domains in SCOPe 2.03: d4k62g_
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k62A (A:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknstyptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k62C (C:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknstyptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k62E (E:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknstyptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k62G (G:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknstyptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'H':
    No sequence available.