PDB entry 4k4h
View 4k4h on RCSB PDB site
Description: Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)3TC-TP.
Class: transferase/DNA
Keywords: DNA POLYMERASE, DNA REPAIR, PHOSPHORYL TRANSFER REACTION, TRANSFERASE-DNA complex
Deposited on
2013-04-12, released
2014-07-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-07-17, with a file datestamp of
2019-07-12.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4ha1, d4k4ha2, d4k4ha3, d4k4ha4 - Chain 'B':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'C':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'D':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'E':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4he1, d4k4he2, d4k4he3, d4k4he4 - Chain 'F':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'G':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'H':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'I':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4hi1, d4k4hi2, d4k4hi3, d4k4hi4 - Chain 'J':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'K':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'L':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'M':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4hm1, d4k4hm2, d4k4hm3, d4k4hm4 - Chain 'N':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'O':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
Species: Homo sapiens [TaxId:9606]
- Chain 'P':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
Species: Homo sapiens [TaxId:9606]
- Heterogens: 1RZ, CA, ACT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4k4hA (A:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4hA (A:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrr
ldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvkvgpgrvlptp
tekdvfrllglpyrepaerdwlehhhh
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4k4hE (E:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4hE (E:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqegqqqkylgvcrlpgpgrrhrrld
iivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrv
lptptekdvfrllglpyrepaerdwl
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
Sequence, based on SEQRES records: (download)
>4k4hI (I:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4hI (I:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrr
ldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpg
rvlptptekdvfrllglpyrepaerdwlehhh
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
Sequence, based on SEQRES records: (download)
>4k4hM (M:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4hM (M:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrr
ldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrckvgpgrvlp
tptekdvfrllglpyrepaerdwle
- Chain 'N':
No sequence available.
- Chain 'O':
No sequence available.
- Chain 'P':
No sequence available.