PDB entry 4k4g
View 4k4g on RCSB PDB site
Description: Ternary crystal structures of human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND L-DCTP.
Class: transferase/DNA
Keywords: DNA POLYMERASE, DNA REPAIR, PHOSPHORYL TRANSFER REACTION,, TRANSFERASE-DNA complex
Deposited on
2013-04-12, released
2014-07-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2014-08-13, with a file datestamp of
2014-08-08.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.203
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4ga1, d4k4ga2, d4k4ga3, d4k4ga4 - Chain 'B':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
- Chain 'C':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
- Chain 'D':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
- Chain 'E':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4ge1, d4k4ge2, d4k4ge3, d4k4ge4 - Chain 'F':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
- Chain 'G':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
- Chain 'H':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
- Chain 'I':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4gi1, d4k4gi2, d4k4gi3, d4k4gi4 - Chain 'J':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
- Chain 'K':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
- Chain 'L':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
- Chain 'M':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4k4gm1, d4k4gm2, d4k4gm3, d4k4gm4 - Chain 'N':
Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
- Chain 'O':
Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
- Chain 'P':
Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
- Heterogens: 1S0, CA, ACT, CAC, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4k4gA (A:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4gA (A:)
tnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrm
aekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqasl
ttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvd
vlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrl
diivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvpgrvlptptekd
vfrllglpyrepaerdwlehhh
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4k4gE (E:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4gE (E:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqqqkylgvcrlpgpgrrhrrldiiv
vpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrvlpt
ptekdvfrllglpyrepaerdwl
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
Sequence, based on SEQRES records: (download)
>4k4gI (I:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4gI (I:)
tnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrm
aekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqasl
ttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvd
vlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrl
diivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvckvgpgrvlptp
tekdvfrllglpyrepaerdwlehhhh
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
Sequence, based on SEQRES records: (download)
>4k4gM (M:)
mssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsip
gigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledi
rsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgka
tcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpg
rrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgc
kvgpgrvlptptekdvfrllglpyrepaerdwlehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4k4gM (M:)
atnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkr
maekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqas
lttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdv
dvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrr
ldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrhgckvgpgrv
lptptekdvfrllglpyrepaerdwleh
- Chain 'N':
No sequence available.
- Chain 'O':
No sequence available.
- Chain 'P':
No sequence available.