PDB entry 4k3e
View 4k3e on RCSB PDB site
Description: Crystal structure of bovine antibody BLV5B8 with ultralong CDR H3
Class: immune system
Keywords: IMMUNOGLOBULIN; CYSTINE KNOT, IMMUNE RECOGNITION, immune system
Deposited on
2013-04-10, released
2013-06-19
The last revision prior to the SCOPe 2.06 freeze date was dated
2013-07-03, with a file datestamp of
2013-06-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.204
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: bovine antibody with ultralong cdr h3, heavy chain
Species: Bos taurus [TaxId:9913]
Gene: IGH
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: bovine antibody with ultralong cdr h3, heavy chain
Species: Bos taurus [TaxId:9913]
Gene: IGH
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: bovine antibody with ultralong cdr h3, light chain
Species: Bos taurus [TaxId:9913]
Gene: IGL, IGL@
Database cross-references and differences (RAF-indexed):
- Uniprot Q3T101 (1-215)
- see remark 999 (4)
- see remark 999 (80)
Domains in SCOPe 2.06: d4k3el1, d4k3el2 - Chain 'M':
Compound: bovine antibody with ultralong cdr h3, light chain
Species: Bos taurus [TaxId:9913]
Gene: IGL, IGL@
Database cross-references and differences (RAF-indexed):
- Uniprot Q3T101
- see remark 999 (4)
- see remark 999 (80)
Domains in SCOPe 2.06: d4k3em1, d4k3em2 - Heterogens: TLA, HOH
PDB Chain Sequences:
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>4k3eL (L:)
eavlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvp
drfsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvt
lfppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaass
ylsltssdwkskgsyscevthegstvtktvkpsecs
- Chain 'M':
Sequence, based on SEQRES records: (download)
>4k3eM (M:)
eavlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvp
drfsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvt
lfppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaass
ylsltssdwkskgsyscevthegstvtktvkpsecs
Sequence, based on observed residues (ATOM records): (download)
>4k3eM (M:)
vlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvpdr
fsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvtlf
ppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaassyl
sltssdwkskgsyscevthegstvtktvkpsec