PDB entry 4k2u
View 4k2u on RCSB PDB site
Description: Crystal structure of PfEBA-175 F1 in complex with R218 antibody Fab fragment
Class: immune system
Keywords: DBL domain, Immunoglobulin domain, Antibody fragment, Cell attachment, Immunity, Receptor, Ligand, Extracellular, IMMUNE SYSTEM
Deposited on
2013-04-09, released
2013-06-12
The last revision prior to the SCOPe 2.04 freeze date was dated
2013-06-12, with a file datestamp of
2013-06-07.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.206
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Erythrocyte binding antigen 175
Species: Plasmodium falciparum [TaxId:36329]
Gene: eba-175, MAL7P1.176
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4k2ua_ - Chain 'B':
Compound: Erythrocyte binding antigen 175
Species: Plasmodium falciparum [TaxId:36329]
Gene: eba-175, MAL7P1.176
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4k2ub_ - Chain 'H':
Compound: antibody heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: antibody heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Antibody Light Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4k2ul1, d4k2ul2 - Chain 'M':
Compound: Antibody Light Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4k2um1, d4k2um2 - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4k2uA (A:)
grntssnnevlsncrekrkgmkwdckkkndrsnyvcipdrriqlcivnlsiiktytketm
kdhfieaskkesqlllkkndnkynskfcndlknsfldyghlamgndmdfggystkaenki
qevfkgahgeisehkiknfrkkwwnefreklweamlsehknninncknipqeelqitqwi
kewhgefllerdnrsklpkskcknntlyeacekecidpcmkyrdwiirskfewhtlskey
etqkvpkenaenylikisenkndakvslllnncdaeyskycdckhtttlvksvlngn
Sequence, based on observed residues (ATOM records): (download)
>4k2uA (A:)
vlsncrekrkgmkwdckkkndnyvcipdrriqlcivnlsiiktytketmkdhfieaskke
sqlllkkndnkynskfcndlknsfldyghlamgndmdfggystkaenkiqevfkgahhki
knfrkkwwnefreklweamlsehknninncknipqeelqitqwikewhgefllerdnrsk
lkecidpcmkyrdwiirskfewhtlskeyetqkkvslllnncdaeyskyc
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4k2uB (B:)
grntssnnevlsncrekrkgmkwdckkkndrsnyvcipdrriqlcivnlsiiktytketm
kdhfieaskkesqlllkkndnkynskfcndlknsfldyghlamgndmdfggystkaenki
qevfkgahgeisehkiknfrkkwwnefreklweamlsehknninncknipqeelqitqwi
kewhgefllerdnrsklpkskcknntlyeacekecidpcmkyrdwiirskfewhtlskey
etqkvpkenaenylikisenkndakvslllnncdaeyskycdckhtttlvksvlngn
Sequence, based on observed residues (ATOM records): (download)
>4k2uB (B:)
evlsncrekrkgmkwdckkknyvcipdrriqlcivnlsiiktytketmkdhfieaskkes
qlllkkndnkynskfcndlknsfldyghlamgndmdfgystkaenkiqevfkisehkikn
frkkwwnefreklweamlsehknninncknipqeelqitqwikewhgefllerdnrsklp
kskcklyeacekcidpcmkyrdwiirskfewhtlskeyetqkvpkenaenylikisdakv
slllnncdaeyskycdc
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>4k2uL (L:)
lsldmmssaqflgllllcfqgtrcdiqmtqttsslsaslgdrvtitcragqdisnylnwy
qqkpdgtvklliyytsrlhsgvpsrfsgsgsgtdysltisnleqediatyfcqqgstfpw
tfgggtkleikradaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserq
ngvlnswtdqdskdstysmsstltltkdeyerhnsytceathkkgefqhtggry
Sequence, based on observed residues (ATOM records): (download)
>4k2uL (L:)
diqmtqttsslsaslgdrvtitcragqdisnylnwyqqkpdgtvklliyytsrlhsgvps
rfsgsgsgtdysltisnleqediatyfcqqgstfpwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyhnsytceathkkgefqhtggry
- Chain 'M':
Sequence, based on SEQRES records: (download)
>4k2uM (M:)
lsldmmssaqflgllllcfqgtrcdiqmtqttsslsaslgdrvtitcragqdisnylnwy
qqkpdgtvklliyytsrlhsgvpsrfsgsgsgtdysltisnleqediatyfcqqgstfpw
tfgggtkleikradaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserq
ngvlnswtdqdskdstysmsstltltkdeyerhnsytceathkkgefqhtggry
Sequence, based on observed residues (ATOM records): (download)
>4k2uM (M:)
diqmtqttsslsaslgdrvtitcragqdisnylnwyqqkpdgtvklliyytsrlhsgvps
rfsgsgsgtdysltisnleqediatyfcqqgstfpwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathkk