PDB entry 4jv1
View 4jv1 on RCSB PDB site
Description: Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming dgtp
Class: transferase/DNA
Keywords: ternary complex of dpo4-DNA-dgtp, DNA polymerase, DNA adduct, transferase-DNA complex
Deposited on
2013-03-25, released
2013-08-28
The last revision prior to the SCOPe 2.08 freeze date was dated
2013-10-09, with a file datestamp of
2013-10-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.218
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: Sulfolobus solfataricus [TaxId:273057]
Gene: DBH, DPO4, SSO2448
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4jv1a1, d4jv1a2 - Chain 'B':
Compound: DNA (5'-d(p*cp*(hn1)p*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3')
- Chain 'C':
Compound: DNA (5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*c)-3')
- Heterogens: DGT, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4jv1A (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfi
Sequence, based on observed residues (ATOM records): (download)
>4jv1A (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.