PDB entry 4jun

View 4jun on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 5
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-11-19, with a file datestamp of 2014-11-14.
Experiment type: XRAY
Resolution: 2.34 Å
R-factor: 0.203
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2F4V6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4juna_
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4junb_
  • Chain 'C':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2F4V6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4junc_
  • Chain 'D':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4jund_
  • Chain 'E':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2F4V6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4june_
  • Chain 'F':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4junf_
  • Heterogens: NAG, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4junA (A:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
    qiipksswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllv
    lwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilk
    pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
    hpltigecpkyvkssrlvlatglrnspqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4junA (A:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
    sswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllvlwgih
    hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndai
    nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
    gecpkyvkssrlvlatglrns
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4junB (B:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4junB (B:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4junC (C:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
    qiipksswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllv
    lwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilk
    pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
    hpltigecpkyvkssrlvlatglrnspqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4junC (C:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
    sswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllvlwgih
    hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndai
    nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
    gecpkyvkssrlvlatglrns
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4junD (D:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4junD (D:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyse
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4junE (E:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
    qiipksswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllv
    lwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilk
    pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
    hpltigecpkyvkssrlvlatglrnspqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4junE (E:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
    sswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllvlwgih
    hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndai
    nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
    gecpkyvkssrlvlatglrns
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4junF (F:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4junF (F:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseea