PDB entry 4jul

View 4jul on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.4
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4jula1, d4jula2
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4julb_
  • Chain 'C':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4julc1, d4julc2
  • Chain 'D':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4juld_
  • Chain 'E':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d4jule1, d4jule2
  • Chain 'F':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4julf_
  • Chain 'H':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4julh1, d4julh2
  • Chain 'I':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4juli_
  • Chain 'J':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4julj1, d4julj2
  • Chain 'K':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4julk_
  • Chain 'L':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4jull_
  • Chain 'M':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4julm_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4julA (A:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julA (A:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrns

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4julB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4julC (C:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julC (C:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrns

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4julD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4julE (E:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julE (E:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgi
hhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpnda
infesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplt
igecpkyvksnklvlatglrns

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4julF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4julH (H:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julH (H:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrns

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4julI (I:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julI (I:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4julJ (J:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julJ (J:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
gecpkyvksnklvlatglrns

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4julK (K:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julK (K:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4julL (L:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julL (L:)
qicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagwl
lgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipkss
wsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgihhs
ndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndainf
esngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihpltige
cpkyvksnklvlatglrns

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >4julM (M:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4julM (M:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlk