PDB entry 4j25

View 4j25 on RCSB PDB site
Description: Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H)
Class: oxidoreductase
Keywords: 2-oxoglutarate oxygenase, oxygen sensing, double-stranded beta helix, jellyroll fold, prolyl-4-hydroxylase, OXIDOREDUCTASE
Deposited on 2013-02-04, released 2014-02-05
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-10-01, with a file datestamp of 2014-09-26.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: 0.213
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q88CM1 (23-End)
      • expression tag (22)
    Domains in SCOPe 2.06: d4j25a1, d4j25a2
  • Chain 'B':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q88CM1 (23-End)
      • expression tag (22)
    Domains in SCOPe 2.06: d4j25b1, d4j25b2
  • Chain 'C':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q88CM1 (23-End)
      • expression tag (22)
    Domains in SCOPe 2.06: d4j25c1, d4j25c2
  • Chain 'D':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q88CM1 (23-228)
      • expression tag (21-22)
    Domains in SCOPe 2.06: d4j25d1, d4j25d2
  • Chain 'E':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4j25e_
  • Chain 'F':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4j25f_
  • Chain 'G':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4j25g_
  • Chain 'H':
    Compound: Putative uncharacterized protein
    Species: Pseudomonas putida [TaxId:160488]
    Gene: PP_5159
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4j25h_
  • Heterogens: MN, OGA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4j25A (A:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25A (A:)
shispehpmlaavvddlathgwsqqahflpadlvralaaecrrrdaiqwidpgqaeacdq
ylaamdqlrlainqglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylneg
wqphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgnd
p

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4j25B (B:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25B (B:)
shispehpmlaavvddlathgwsqqahflpadlvralaaecrrrdaegiqwidpgqaeac
dqylaamdqlrlainqglflgledfechfalyppgafyrrhldrfdrrmvsavlylnegw
qphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4j25C (C:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25C (C:)
shispehpmlaavvddlathgwsqqahflpadlvralaaecrrrdaegelwidpgqaeac
dqylaamdqlrlainqglflgledfechfalyppgafyrrhldrfrdddrrmvsavlyln
egwqphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4j25D (D:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25D (D:)
ashispehpmlaavvddlathgwsqqahflpadlvralaaecrrrdiqwidpgqaeacdq
ylaamdqlrlainqglflgledfechfalyppgafyrrhldrfdddrrmvsavlylnegw
qphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndp
f

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4j25E (E:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25E (E:)
mlaavvddlathgwsqqahflpadlvralaaecrrrdaegelnpaetirgdqiqwidpgq
aeacdqylaamdqlrlainqglflgledfechfalyppgafyrrhldrfrdddrrmvsav
lylnegwqphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlsltgwf
rrrg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4j25F (F:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25F (F:)
pmlaavvddlathgwsqqahflpadlvralaaecrrrdaegelnpagvtqevretirgdq
iqwidpgqaeacdqylaamdqlrlainqglflgledfechfalyppgafyrrhldrddrr
mvsavlylnegwqphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerls
ltgwfrr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4j25G (G:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25G (G:)
mlaavvddlathgwsqqahflpadlvralaaecrrrdaeelnparetirgdqiqwidpgq
aeacdqylaamdqlrlainqglflgledfechfalyppgafyrrhldrfrdddrrmvsav
lylnegwqphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlsltgwf
rrrg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4j25H (H:)
mgsshhhhhhssglvprgshmashispehpmlaavvddlathgwsqqahflpadlvrala
aecrrrdaegelnpagvgrgatqevretirgdqiqwidpgqaeacdqylaamdqlrlain
qglflgledfechfalyppgafyrrhldrfrdddrrmvsavlylnegwqphdggqlrmfl
adgvehdvepvagclvvflsgevphevlpagrerlsltgwfrrrgndpf

    Sequence, based on observed residues (ATOM records): (download) 
    >4j25H (H:)
pmlaavvddlathgwsqqahflpadlvralaaecrrrdaegelnpavretirgdqiqwid
pgqaeacdqylaamdqlrlainqglflgledfechfalyppgafyrrhldrfrdddrrmv
savlylnegwqphdggqlrmfladgvehdvepvagclvvflsgevphevlpagrerlslt
gwfrrr