PDB entry 4il6
View 4il6 on RCSB PDB site
Description: Structure of Sr-substituted photosystem II
Class: electron transport
Keywords: Photosystem II, Electron transfer, Light-Driven Water Oxidation, Membrane-Protein Complex, Oxygen Evolution, Oxygen-Evolving Complex, Proton-Coupled Electron Transfer, Photosynthesis, Reaction Centre, Sr-Substituted Photosystem II, Substrate Water molecule, Trans-Membrane Alpha Helix, ELECTRON TRANSPORT
Deposited on
2012-12-29, released
2013-03-06
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-11-15, with a file datestamp of
2017-11-10.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Photosystem Q(B) protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6a_ - Chain 'B':
Compound: Photosystem II core light harvesting protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6b_ - Chain 'C':
Compound: Photosystem II CP43 protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6c_ - Chain 'D':
Compound: Photosystem II D2 protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6d_ - Chain 'E':
Compound: Cytochrome b559 subunit alpha
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6e_ - Chain 'F':
Compound: Cytochrome b559 subunit beta
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6f_ - Chain 'H':
Compound: Photosystem II reaction center protein H
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6h_ - Chain 'I':
Compound: Photosystem II reaction center protein I
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: Photosystem II reaction center protein J
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6j_ - Chain 'K':
Compound: Photosystem II reaction center protein K
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6k_ - Chain 'L':
Compound: Photosystem II reaction center protein L
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6l_ - Chain 'M':
Compound: Photosystem II reaction center protein M
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6m_ - Chain 'O':
Compound: Photosystem II manganese-stabilizing polypeptide
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6o_ - Chain 'R':
Compound: Photosystem II protein Y
Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: Photosystem II reaction center protein T
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: Photosystem II 12 kDa extrinsic protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6u_ - Chain 'V':
Compound: cytochrome c-550
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6v_ - Chain 'X':
Compound: Photosystem II reaction center protein X
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6x_ - Chain 'Y':
Compound: Photosystem II reaction center protein ycf12
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'Z':
Compound: Photosystem II reaction center protein Z
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4il6z_ - Chain 'a':
Compound: Photosystem Q(B) protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'b':
Compound: Photosystem II core light harvesting protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'c':
Compound: Photosystem II CP43 protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'd':
Compound: Photosystem II D2 protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'e':
Compound: Cytochrome b559 subunit alpha
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'f':
Compound: Cytochrome b559 subunit beta
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'h':
Compound: Photosystem II reaction center protein H
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'i':
Compound: Photosystem II reaction center protein I
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'j':
Compound: Photosystem II reaction center protein J
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'k':
Compound: Photosystem II reaction center protein K
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'l':
Compound: Photosystem II reaction center protein L
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'm':
Compound: Photosystem II reaction center protein M
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'o':
Compound: Photosystem II manganese-stabilizing polypeptide
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 't':
Compound: Photosystem II reaction center protein T
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'u':
Compound: Photosystem II 12 kDa extrinsic protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'v':
Compound: cytochrome c-550
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'x':
Compound: Photosystem II reaction center protein X
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'y':
Compound: Photosystem II reaction center protein ycf12
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'z':
Compound: Photosystem II reaction center protein Z
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Heterogens: OER, FE2, CL, CLA, PHO, BCR, PL9, SQD, LMG, DMS, UNL, LMT, GOL, LHG, HTG, DGD, BCT, HEM, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6A (A:)
anlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsgs
llygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgrq
welsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqaeh
nilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetyniva
ahgyfgrlifqyasfnnsrslhfflaawpvvgvwfaalgistmafnlngfnfnhsvidak
gnvintwadiinranlgmevmhernahnfpldla
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6B (B:)
glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
idpelspeqvewgfyqkvgdvttrk
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6C (C:)
atnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekpmy
eqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetlee
yssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvitnp
tldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwarr
afiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflirdq
klganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnkikn
diqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvghl
whagraraaaagfekgidresepvlsmpsld
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6D (D:)
ergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassyleg
cnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqf
eiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhn
wtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtan
rfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpe
fetfytknlllnegirawmapqdqphenfvfpeevlprgnal
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6E (E:)
ttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsi
plvtdrfeakqqvetfleql
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6F (F:)
sypiftvrwvavhtlavptifflgaiaamqfiqr
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6H (H:)
arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
wka
- Chain 'I':
No sequence available.
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6J (J:)
eggriplwivatvagmgvivivglffygayaglgssl
- Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6K (K:)
klpeayaifdplvdvlpvipvlflalafvwqaavgfr
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6L (L:)
mepnpnrqpvelnrtslylglllilvlallfssyffn
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6M (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqk
- Chain 'O':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6O (O:)
qtltyddivgtglankcptlddtargaypidssqtyriarlclqpttflvkeepknkrqe
aefvptklvtrettsldqiqgelkvnsdgsltfveedgidfqpvtvqmaggeripllftv
knlvastqpnvtsittstdfkgefnvpsyrtanfldpkgrglasgydsaialpqakeeel
aranvkrfsltkgqislnvakvdgrtgeiagtfeseqlsdddmgahephevkiqgvfyas
iepa
- Chain 'R':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6U (U:)
elvnvvdeklgtaygekidlnntniaafiqyrglyptlaklivknapyesvedvlnipgl
terqkqilrenlehftvtevetalveggdrynnglyk
- Chain 'V':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6V (V:)
aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
vepkilgdkwgggkvyy
- Chain 'X':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6X (X:)
titpslkgffigllsgavvlgltfavliaisqidkvqrsl
- Chain 'Y':
No sequence available.
- Chain 'Z':
Sequence; same for both SEQRES and ATOM records: (download)
>4il6Z (Z:)
mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
vv
- Chain 'a':
No sequence available.
- Chain 'b':
No sequence available.
- Chain 'c':
No sequence available.
- Chain 'd':
No sequence available.
- Chain 'e':
No sequence available.
- Chain 'f':
No sequence available.
- Chain 'h':
No sequence available.
- Chain 'i':
No sequence available.
- Chain 'j':
No sequence available.
- Chain 'k':
No sequence available.
- Chain 'l':
No sequence available.
- Chain 'm':
No sequence available.
- Chain 'o':
No sequence available.
- Chain 't':
No sequence available.
- Chain 'u':
No sequence available.
- Chain 'v':
No sequence available.
- Chain 'x':
No sequence available.
- Chain 'y':
No sequence available.
- Chain 'z':
No sequence available.