PDB entry 4i6n
View 4i6n on RCSB PDB site
Description: Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester
Class: Hydrolase/Signaling Protein
Keywords: helix-beta-helix sandwich, protein-protein complex, deubiquitination, ubiquitin c-terminal hydrolase, cytosol, Hydrolase-Signaling Protein complex
Deposited on
2012-11-29, released
2013-05-29
The last revision prior to the SCOPe 2.03 freeze date was dated
2013-05-29, with a file datestamp of
2013-05-24.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.176
AEROSPACI score: 0.56
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin carboxyl-hydrolase
Species: Trichinella spiralis [TaxId:6334]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4i6na_ - Chain 'B':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4i6nb_ - Chain 'C':
Compound: Ubiquitin carboxyl-hydrolase
Species: Trichinella spiralis [TaxId:6334]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4i6nc_ - Chain 'D':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4i6nd_ - Heterogens: DTT, NA, GVE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4i6nA (A:)
gplgsmaegnwcliesdpgiftemihgfgctglqveelvvldesiehlkpihgfiflfrw
lkkemrkevddspqtctdvyfsqqviqnacasqalinlllncdhpdvdlgptlkefkdft
ydldsasrglcltnsekiravhnsfgrqqlfeiddqqkldeedvfhfvtyvpvndgvyel
dglraaplrlgtvasdgdwtevaikaikekiknygesevrfnlmavisdqk
Sequence, based on observed residues (ATOM records): (download)
>4i6nA (A:)
plgsmaegnwcliesdpgiftemihgfgctglqveelvvldesiehlkpihgfiflfrwl
kkemrkevddspqtctdvyfsqqviqnacasqalinlllncdhpdvdlgptlkefkdfty
dldsasrglcltnsekiravhnsfgqkldeedvfhfvtyvpvndgvyeldglraaplrlg
tvasdgdwtevaikaikekiknygesevrfnlmavisdq
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4i6nB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4i6nC (C:)
gplgsmaegnwcliesdpgiftemihgfgctglqveelvvldesiehlkpihgfiflfrw
lkkemrkevddspqtctdvyfsqqviqnacasqalinlllncdhpdvdlgptlkefkdft
ydldsasrglcltnsekiravhnsfgrqqlfeiddqqkldeedvfhfvtyvpvndgvyel
dglraaplrlgtvasdgdwtevaikaikekiknygesevrfnlmavisdqk
Sequence, based on observed residues (ATOM records): (download)
>4i6nC (C:)
plgsmaegnwcliesdpgiftemihgfgctglqveelvvldesiehlkpihgfiflfrwl
kkemrkevddspqtctdvyfsqqviqnacasqalinlllncdhpdvdlgptlkefkdfty
dldsasrglcltnsekiravhnsfgkldeedvfhfvtyvpvndgvyeldglraaplrlgt
vasdgdwtevaikaikekiknygesevrfnlmavisd
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4i6nD (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg