PDB entry 4hgm

View 4hgm on RCSB PDB site
Description: Shark IgNAR Variable Domain
Class: immune system
Keywords: Ig-fold, human albumin, V-nar, IMMUNE SYSTEM
Deposited on 2012-10-08, released 2013-05-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-07-03, with a file datestamp of 2013-06-28.
Experiment type: XRAY
Resolution: 2.34 Å
R-factor: 0.223
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Shark V-NAR
    Species: Squalus acanthias [TaxId:7797]
    Database cross-references and differences (RAF-indexed):
    • PDB 4HGM (0-End)
    Domains in SCOPe 2.07: d4hgma_
  • Chain 'B':
    Compound: serum albumin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4hgmb1, d4hgmb2, d4hgmb3
  • Heterogens: EDO, ACE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4hgmA (A:)
    trvdqspsslsasvgdrvtitcvltdtsyplystywyqqkpgssnkeqisisgrysesvn
    kgtksftltisslqpedfatyycramgtniwtgdgagtkveikaaahhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4hgmA (A:)
    trvdqspsslsasvgdrvtitcvltdtsyplystywyqqkpgssnkeqisisgrysesvn
    kgtksftltisslqpedfatyycramgtniwtgdgagtkveik
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4hgmB (B:)
    dahksevahrfkdlgeenfkalvliafaqylqqcpfedhvklvnevtefaktcvadesae
    ncdkslhtlfgdklctvatlretygemadccakqepernecflqhkddnpnlprlvrpev
    dvmctafhdneetflkkylyeiarrhpyfyapellffakrykaafteccqaadkaacllp
    kldelrdegkassakqrlkcaslqkfgerafkawavarlsqrfpkaefaevsklvtdltk
    vhtecchgdllecaddradlakyicenqdsissklkeccekpllekshciaevendempa
    dlpslaadfveskdvcknyaeakdvflgmflyeyarrhpdysvvlllrlaktyettlekc
    caaadphecyakvfdefkplveepqnlikqncelfeqlgeykfqnallvrytkkvpqvst
    ptlvevsrnlgkvgskcckhpeakrmpcaedylsvvlnqlcvlhektpvsdrvtkcctes
    lvnrrpcfsalevdetyvpkefnaetftfhadictlsekerqikkqtalvelvkhkpkat
    keqlkavmddfaafvekcckaddketcfaeegkklvaasqaalgl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4hgmB (B:)
    ksevahrfkdlgeenfkalvliafaqylqqcpfedhvklvnevtefaktcvadesaencd
    kslhtlfgdklctvaemadccakqepernecflqhkddnpnlprlvrpevdvmctafhdn
    eetflkkylyeiarrhpyfyapellffakrykaafteccqaadkaacllpkldelrdegk
    assakqrlkcaslqkfgerafkawavarlsqrfpkaefaevsklvtdltkvhtecchgdl
    lecaddradlakyicenqdsissklkeccekpllekshciaevendempadlpslaadfv
    eskdvcknyaeakdvflgmflyeyarrhpdysvvlllrlaktyettlekccaaadphecy
    akvfdefkplveepqnlikqncelfeqlgeyqnallvrytkkvpqvstptlvevsrnlgk
    vgskcckhpeakrmpcaedylsvvlnqlcvlhektpvsdrvtkccslvnrrpcfsale