PDB entry 4hep

View 4hep on RCSB PDB site
Description: Complex of lactococcal phage TP901-1 with a llama vHH (vHH17) binder (nanobody)
Class: viral protein
Keywords: Alpha-beta, phage receptor binding protein, llama glama vHH domain, viral protein, CELL ADHESION-IMMUNE SYSTEM complex
Deposited on 2012-10-04, released 2013-03-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-07-31, with a file datestamp of 2013-07-26.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.198
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: bpp
    Species: Lactococcus phage TP901-1 [TaxId:35345]
    Gene: bpp, ORF49
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4hepa1, d4hepa2
  • Chain 'G':
    Compound: vHH17 domain
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 4HEP (Start-130)
    Domains in SCOPe 2.06: d4hepg_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4hepA (A:)
masikkvyrgmkngaetinddleainseltsggnvvhktgdetiagkktftgnvevngsl
tlptkswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcs
lvghmvggwnafhidipssgvcqwfgptassgtprgtgtypid

    Sequence, based on observed residues (ATOM records): (download) 
    >4hepA (A:)
asikkvyrgmkngaetinddleainseltsggnvvhktgdetiagkktftgnvevngslt
lptkswsgelgggiilslrkkgttveysiggeisssilansnlvnrsvpnefcprnrcsl
vghmvggwnafhidipssgvcqwfgptassgtprgtgtypid

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4hepG (G:)
dvqlvesggglvqpggslrlsceasgfsfddyaigwfrqapgkeregvsyismsdgrtyv
adsvtgrftissdnakntvylqmnslkledtavyycaagrfvtfgsawsfvgggpygidy
wgkgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >4hepG (G:)
vqlvesggglvqpggslrlsceasgfsfddyaigwfrqapgkeregvsyismsdgrtyva
dsvtgrftissdnakntvylqmnslkledtavyycaagrfvtfgsawsfvgggpygidyw
gkgtlvtvss