PDB entry 4h26
View 4h26 on RCSB PDB site
Description: TCR interaction with peptide mimics of nickel offers structure insight to nickel contact allergy
Class: immune system
Keywords: protein-protein complex, immunoglobulin fold, antigen presentation, TCR, cell surface, IMMUNE SYSTEM
Deposited on
2012-09-12, released
2013-10-16
The last revision prior to the SCOPe 2.03 freeze date was dated
2013-10-16, with a file datestamp of
2013-10-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.225
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRA, HLA-DRA1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4h26a1, d4h26a2 - Chain 'B':
Compound: MHC class II antigen
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRB3
Database cross-references and differences (RAF-indexed):
- Uniprot B8YAC7 (3-185)
- expression tag (0-2)
- conflict (74)
- expression tag (186-187)
Domains in SCOPe 2.03: d4h26b1, d4h26b2 - Chain 'C':
Compound: peptide
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRA, HLA-DRA1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4h26d1, d4h26d2 - Chain 'E':
Compound: MHC class II antigen
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRB3
Database cross-references and differences (RAF-indexed):
- Uniprot B8YAC7 (3-185)
- expression tag (0-2)
- conflict (74)
- expression tag (186-187)
Domains in SCOPe 2.03: d4h26e1, d4h26e2 - Chain 'F':
Compound: peptide
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4h26A (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4h26B (B:)
trprflellksechffngtervrfleryfhnqeefvrfdsdvgeyravtelgrpvaeswn
sqkdlleqkrgqvdtycrhnygvvesftvqrrvhpqvtvypaktqplqhhnllvcsvsgf
ypgsievrwfrngqeektgvvstglihngdwtfqtlvmletvprsgevytcqvehpsvts
pltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4h26D (D:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4h26E (E:)
trprflellksechffngtervrfleryfhnqeefvrfdsdvgeyravtelgrpvaeswn
sqkdlleqkrgqvdtycrhnygvvesftvqrrvhpqvtvypaktqplqhhnllvcsvsgf
ypgsievrwfrngqeektgvvstglihngdwtfqtlvmletvprsgevytcqvehpsvts
pltvewra
- Chain 'F':
No sequence available.