PDB entry 4gyq
View 4gyq on RCSB PDB site
Description: Crystal Structure of New Delhi Metallo-beta-Lactamase-1 D223A mutant from Klebsiella pneumoniae
Class: hydrolase
Keywords: Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors, MTBI, alpha-beta-beta-alpha fold, hydrolase
Deposited on
2012-09-05, released
2012-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-01-24, with a file datestamp of
2018-01-19.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: N/A
AEROSPACI score: 0.56
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Beta-lactamase NDM-1
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
- Uniprot C7C422 (Start-242)
- engineered mutation (195)
Domains in SCOPe 2.08: d4gyqa_ - Chain 'B':
Compound: Beta-lactamase NDM-1
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
- Uniprot C7C422 (Start-242)
- engineered mutation (195)
Domains in SCOPe 2.08: d4gyqb_ - Chain 'C':
Compound: Beta-lactamase NDM-1
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
- Uniprot C7C422 (Start-242)
- engineered mutation (195)
Domains in SCOPe 2.08: d4gyqc_ - Chain 'D':
Compound: Beta-lactamase NDM-1
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
- Uniprot C7C422 (Start-242)
- engineered mutation (195)
Domains in SCOPe 2.08: d4gyqd_ - Heterogens: EDO, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4gyqA (A:)
snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
vvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
lapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
clikdskakslgnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
klr
Sequence, based on observed residues (ATOM records): (download)
>4gyqA (A:)
rptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdt
awtddqtaqilnwikqeinlpvalavvthahmggmdalhaagiatyanalsnqlapqegm
vaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdsk
akslgnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4gyqB (B:)
snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
vvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
lapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
clikdskakslgnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
klr
Sequence, based on observed residues (ATOM records): (download)
>4gyqB (B:)
metgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqt
aqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaq
hsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskaksl
gnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4gyqC (C:)
snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
vvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
lapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
clikdskakslgnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
klr
Sequence, based on observed residues (ATOM records): (download)
>4gyqC (C:)
tigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtaw
tddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqeg
mvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikds
kakslgnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4gyqD (D:)
snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
vvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
lapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
clikdskakslgnlgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
klr
Sequence, based on observed residues (ATOM records): (download)
>4gyqD (D:)
tgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqtaq
ilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhs
ltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgn
lgaadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr