PDB entry 4grx

View 4grx on RCSB PDB site
Description: Structure of an omega-aminotransferase from Paracoccus denitrificans
Class: transferase
Keywords: class III transaminase, TRANSFERASE
Deposited on 2012-08-27, released 2012-12-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: aminotransferase
    Species: Paracoccus denitrificans [TaxId:318586]
    Gene: Pden_3984
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4grxa_
  • Chain 'B':
    Compound: aminotransferase
    Species: Paracoccus denitrificans [TaxId:318586]
    Gene: Pden_3984
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4grxb_
  • Chain 'C':
    Compound: aminotransferase
    Species: Paracoccus denitrificans [TaxId:318586]
    Gene: Pden_3984
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4grxc_
  • Chain 'D':
    Compound: aminotransferase
    Species: Paracoccus denitrificans [TaxId:318586]
    Gene: Pden_3984
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4grxd_
  • Heterogens: NA, DAV, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4grxA (A:)
maswshpqfekganqpqswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrr
yldansglwnmvagfdhkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdn
grvfytnsgseandtmvkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsv
fglplpgfihltcphywrygeegeteaqfvarlareledtitregadtiagffaepvmga
ggvippakgyfqailpilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknlt
agffpmgavilgpdlakrveaaveaieefphgftasghpvgcaialkaidvvmneglaen
vrrlaprfeaglkriadrpnigeyrgigfmwaleavkdkptktpfdanlsvseriantct
dlglicrplgqsivlcppfilteaqmdemfeklekaldkvfaeva

    Sequence, based on observed residues (ATOM records): (download) 
    >4grxA (A:)
qswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrryldansglwnmvagfd
hkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdngrvfytnsgseandtm
vkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsvfglplpgfihltcphy
wrygeegeteaqfvarlareledtitregadtiagffaepvmgaggvippakgyfqailp
ilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknltagffpmgavilgpdla
krveaaveaieefphgftasghpvgcaialkaidvvmneglaenvrrlaprfeaglkria
drpnigeyrgigfmwaleavkdkptktpfdanlsvseriantctdlglicrplgqsivlc
ppfilteaqmdemfeklekaldkvfaeva

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4grxB (B:)
maswshpqfekganqpqswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrr
yldansglwnmvagfdhkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdn
grvfytnsgseandtmvkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsv
fglplpgfihltcphywrygeegeteaqfvarlareledtitregadtiagffaepvmga
ggvippakgyfqailpilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknlt
agffpmgavilgpdlakrveaaveaieefphgftasghpvgcaialkaidvvmneglaen
vrrlaprfeaglkriadrpnigeyrgigfmwaleavkdkptktpfdanlsvseriantct
dlglicrplgqsivlcppfilteaqmdemfeklekaldkvfaeva

    Sequence, based on observed residues (ATOM records): (download) 
    >4grxB (B:)
qswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrryldansglwnmvagfd
hkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdngrvfytnsgseandtm
vkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsvfglplpgfihltcphy
wrygeegeteaqfvarlareledtitregadtiagffaepvmgaggvippakgyfqailp
ilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknltagffpmgavilgpdla
krveaaveaieefphgftasghpvgcaialkaidvvmneglaenvrrlaprfeaglkria
drpnigeyrgigfmwaleavkdkptktpfdanlsvseriantctdlglicrplgqsivlc
ppfilteaqmdemfeklekaldkvfaeva

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4grxC (C:)
maswshpqfekganqpqswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrr
yldansglwnmvagfdhkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdn
grvfytnsgseandtmvkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsv
fglplpgfihltcphywrygeegeteaqfvarlareledtitregadtiagffaepvmga
ggvippakgyfqailpilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknlt
agffpmgavilgpdlakrveaaveaieefphgftasghpvgcaialkaidvvmneglaen
vrrlaprfeaglkriadrpnigeyrgigfmwaleavkdkptktpfdanlsvseriantct
dlglicrplgqsivlcppfilteaqmdemfeklekaldkvfaeva

    Sequence, based on observed residues (ATOM records): (download) 
    >4grxC (C:)
qswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrryldansglwnmvagfd
hkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdngrvfytnsgseandtm
vkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsvfglplpgfihltcphy
wrygeegeteaqfvarlareledtitregadtiagffaepvmgaggvippakgyfqailp
ilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknltagffpmgavilgpdla
krveaaveaieefphgftasghpvgcaialkaidvvmneglaenvrrlaprfeaglkria
drpnigeyrgigfmwaleavkdkptktpfdanlsvseriantctdlglicrplgqsivlc
ppfilteaqmdemfeklekaldkvfaeva

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4grxD (D:)
maswshpqfekganqpqswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrr
yldansglwnmvagfdhkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdn
grvfytnsgseandtmvkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsv
fglplpgfihltcphywrygeegeteaqfvarlareledtitregadtiagffaepvmga
ggvippakgyfqailpilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknlt
agffpmgavilgpdlakrveaaveaieefphgftasghpvgcaialkaidvvmneglaen
vrrlaprfeaglkriadrpnigeyrgigfmwaleavkdkptktpfdanlsvseriantct
dlglicrplgqsivlcppfilteaqmdemfeklekaldkvfaeva

    Sequence, based on observed residues (ATOM records): (download) 
    >4grxD (D:)
qswearaetyslygftdmpsvhqrgtvvvthgegpyivdvhgrryldansglwnmvagfd
hkglieaakaqydrfpgyhaffgrmsdqtvmlseklvevspfdngrvfytnsgseandtm
vkmlwflhaaegkpqkrkiltrwnayhgvtavsasmtgkpynsvfglplpgfihltcphy
wrygeegeteaqfvarlareledtitregadtiagffaepvmgaggvippakgyfqailp
ilrkydipmisdevicgfgrtgntwgcltydfmpdaiissknltagffpmgavilgpdla
krveaaveaieefphgftasghpvgcaialkaidvvmneglaenvrrlaprfeaglkria
drpnigeyrgigfmwaleavkdkptktpfdanlsvseriantctdlglicrplgqsivlc
ppfilteaqmdemfeklekaldkvfaeva