PDB entry 4gmd
View 4gmd on RCSB PDB site
Description: The crystal structure of thymidylate kinase from Pseudomonas aeruginosa PAO1 in complex with AZT Monophosphate
Class: Transferase/Inhibitor
Keywords: Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors, MTBI, PROTEIN STRUCTURE INITIATIVE, TRANSFERASE, Transferase-Inhibitor complex
Deposited on
2012-08-15, released
2012-08-29
The last revision prior to the SCOPe 2.04 freeze date was dated
2012-08-29, with a file datestamp of
2012-08-24.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: 0.18
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: thymidylate kinase
Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
Gene: PA2962, tmk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4gmda_ - Chain 'B':
Compound: thymidylate kinase
Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
Gene: PA2962, tmk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4gmdb_ - Chain 'C':
Compound: thymidylate kinase
Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
Gene: PA2962, tmk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4gmdc_ - Chain 'D':
Compound: thymidylate kinase
Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
Gene: PA2962, tmk
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4gmdd_ - Heterogens: ATM, CL, GOL, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4gmdA (A:)
snamtglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllaps
depmaadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpearia
alesfvqgdlrpdltlvfdlpveiglaraaargrldrfeqedrrffeavrqtylqraaqa
peryqvldaglplaevqagldrllpnllerlng
Sequence, based on observed residues (ATOM records): (download)
>4gmdA (A:)
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpveigargrldrfeqedrrffeavrqtylqraaqaperyqvlda
glplaevqagldrllpnllerln
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4gmdB (B:)
snamtglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllaps
depmaadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpearia
alesfvqgdlrpdltlvfdlpveiglaraaargrldrfeqedrrffeavrqtylqraaqa
peryqvldaglplaevqagldrllpnllerlng
Sequence, based on observed residues (ATOM records): (download)
>4gmdB (B:)
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpvedrfeqedrrffeavrqtylqraaqaperyqvldaglplaev
qagldrllpnllerl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4gmdC (C:)
snamtglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllaps
depmaadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpearia
alesfvqgdlrpdltlvfdlpveiglaraaargrldrfeqedrrffeavrqtylqraaqa
peryqvldaglplaevqagldrllpnllerlng
Sequence, based on observed residues (ATOM records): (download)
>4gmdC (C:)
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpvrldrfeqedrrffeavrqtylqraaqaperyqvldaglplae
vqagldrllpnllerln
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4gmdD (D:)
snamtglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllaps
depmaadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpearia
alesfvqgdlrpdltlvfdlpveiglaraaargrldrfeqedrrffeavrqtylqraaqa
peryqvldaglplaevqagldrllpnllerlng
Sequence, based on observed residues (ATOM records): (download)
>4gmdD (D:)
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpvldrfeqedrrffeavrqtylqraaqaperyqvldaglplaev
qagldrllpnllerln