PDB entry 4fjv
View 4fjv on RCSB PDB site
Description: Crystal Structure of Human Otubain2 and Ubiquitin Complex
Class: hydrolase
Keywords: Ubiquitin, otubain, NEDD8,cleavage specificity, deubiquitylation, cysteine protease, HYDROLASE
Deposited on
2012-06-12, released
2013-06-12
The last revision prior to the SCOPe 2.06 freeze date was dated
2015-02-25, with a file datestamp of
2015-02-20.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.209
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin thioesterase OTUB2
Species: Homo sapiens [TaxId:9606]
Gene: OTUB2, C14orf137, OTB2, OTU2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4fjva_ - Chain 'B':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4fjvb1, d4fjvb2 - Chain 'C':
Compound: Ubiquitin thioesterase OTUB2
Species: Homo sapiens [TaxId:9606]
Gene: OTUB2, C14orf137, OTB2, OTU2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4fjvc_ - Chain 'D':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4fjvd1, d4fjvd2 - Heterogens: GOL, NEH, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4fjvA (A:)
gshmsetsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralg
ysylesllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvss
llkvfndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdh
iqitalsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaadkh
Sequence, based on observed residues (ATOM records): (download)
>4fjvA (A:)
setsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralgysyl
esllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvssllkv
fndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdhiqit
alsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaad
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4fjvB (B:)
ypydvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>4fjvB (B:)
dvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4fjvC (C:)
gshmsetsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralg
ysylesllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvss
llkvfndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdh
iqitalsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaadkh
Sequence, based on observed residues (ATOM records): (download)
>4fjvC (C:)
etsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralgysyle
sllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvssllkvf
ndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdhiqita
lsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaad
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4fjvD (D:)
ypydvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>4fjvD (D:)
dvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrg