PDB entry 4f7c

View 4f7c on RCSB PDB site
Description: Crystal structure of bovine CD1d with bound C12-di-sulfatide
Class: immune system
Keywords: protein-glycolipid complex, MHC-fold, Ig-fold, antigen presentation, TCR, membrane, IMMUNE SYSTEM
Deposited on 2012-05-15, released 2012-11-14
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-11-14, with a file datestamp of 2012-11-09.
Experiment type: XRAY
Resolution: 2.86 Å
R-factor: 0.225
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CD1D antigen, d polypeptide
    Species: Bos taurus [TaxId:9913]
    Gene: CD1D
    Database cross-references and differences (RAF-indexed):
    • Uniprot A1L565 (Start-276)
      • expression tag (277-278)
    Domains in SCOPe 2.05: d4f7ca1, d4f7ca2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Bos taurus [TaxId:9913]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4f7cb_
  • Chain 'C':
    Compound: CD1D antigen, d polypeptide
    Species: Bos taurus [TaxId:9913]
    Gene: CD1D
    Database cross-references and differences (RAF-indexed):
    • Uniprot A1L565 (Start-276)
      • expression tag (277-278)
    Domains in SCOPe 2.05: d4f7cc1, d4f7cc2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Bos taurus [TaxId:9913]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4f7cd_
  • Heterogens: 0SG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4f7cA (A:)
spapqtpfsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsd
qqweqlqhtllvyrssftrdiwefveklhveypleiqiatgcellprnisesflraafqg
rdvlsfqgmswvsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkse
lekqvkpeawlssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnad
stwylrvtldvaagevaglscqvkhsslgdqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4f7cA (A:)
pfsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsdqqweql
qhtllvyrssftrdiwefveklhveypleiqiatgcellsesflraafqgrdvlsfqgms
wvsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkselekqvkpeaw
lssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnadstwylrvtld
vaagevaglscqvkhsslgdqdiilywhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4f7cB (B:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl

    Sequence, based on observed residues (ATOM records): (download) 
    >4f7cB (B:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4f7cC (C:)
spapqtpfsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsd
qqweqlqhtllvyrssftrdiwefveklhveypleiqiatgcellprnisesflraafqg
rdvlsfqgmswvsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkse
lekqvkpeawlssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnad
stwylrvtldvaagevaglscqvkhsslgdqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4f7cC (C:)
fsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsdqqweqlq
htllvyrssftrdiwefveklhveypleiqiatgcellsesflraafqgrdvlsfqgmsw
vsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkselekqvkpeawl
ssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnadstwylrvtldv
aglscqvkhsslgdqdiilywhh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4f7cD (D:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl

    Sequence, based on observed residues (ATOM records): (download) 
    >4f7cD (D:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrd