PDB entry 4f2m
View 4f2m on RCSB PDB site
Description: Crystal structure of a TGEV coronavirus Spike fragment in complex with the TGEV neutralizing monoclonal antibody 1AF10
Class: viral protein/immune system
Keywords: beta-barrel, immunoglobulin, virus entry, virus neutralization, cellular receptor, aminopeptidase N, glycosylation, virus membrane, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on
2012-05-08, released
2012-08-22
The last revision prior to the SCOPe 2.06 freeze date was dated
2012-08-22, with a file datestamp of
2012-08-17.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.218
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: monoclonal antibody 1AF10, heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: monoclonal antibody 1AF10, light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4f2mb1, d4f2mb2 - Chain 'C':
Compound: monoclonal antibody 1AF10, heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: monoclonal antibody 1AF10, light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4f2md1, d4f2md2 - Chain 'E':
Compound: Spike protein
Species: TGEV virulent Purdue [TaxId:398812]
Gene: S
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Spike protein
Species: TGEV virulent Purdue [TaxId:398812]
Gene: S
Database cross-references and differences (RAF-indexed):
- Heterogens: ACY, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4f2mB (B:)
dilltqspailsvspgervslscrasqsigtsihwyqqrtngsprplikyasesisgips
rfsgsgsgtdftlninsvesediadyfcqqtdswpttfgagtklelkradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>4f2mB (B:)
dilltqspailsvspgervslscrasqsigtsihwyqqrtngsprplikyasesisgips
rfsgsgsgtdftlninsvesediadyfcqqtdswpttfgagtklelkradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4f2mD (D:)
dilltqspailsvspgervslscrasqsigtsihwyqqrtngsprplikyasesisgips
rfsgsgsgtdftlninsvesediadyfcqqtdswpttfgagtklelkradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>4f2mD (D:)
dilltqspailsvspgervslscrasqsigtsihwyqqrtngsprplikyasesisgips
rfsgsgsgtdftlninsvesediadyfcqqtdswpttfgagtklelkradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnr
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.