PDB entry 4f13

View 4f13 on RCSB PDB site
Description: Alginate lyase A1-III Y246F complexed with tetrasaccharide
Class: lyase
Keywords: ALPHA BARREL, POLYSACCHARIDE LYASE, Alginate, LYASE
Deposited on 2012-05-06, released 2012-06-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alginate lyase
    Species: Sphingomonas [TaxId:28214]
    Gene: ALY
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KWU1 (2-352)
      • expression tag (1)
      • engineered mutation (242)
      • conflict (343)
    Domains in SCOPe 2.08: d4f13a1, d4f13a2
  • Chain 'B':
    Compound: Alginate lyase
    Species: Sphingomonas [TaxId:28214]
    Gene: ALY
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KWU1 (2-352)
      • expression tag (1)
      • engineered mutation (242)
      • conflict (343)
    Domains in SCOPe 2.08: d4f13b1, d4f13b2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4f13A (A:)
gshpfdqavvkdptasyvdvkarrtflqsgqlddrlkaalpkeydctteatpnpqqgemv
iprrylsgnhgpvnpdyepvvtlyrdfekisatlgnlyvatgkpvyatcllnmldkwaka
dallnydpksqswyqvewsaataafalstmmaepnvdtaqrervvkwlnrvarhqtsfpg
gdtsccnnhsywrgqeatiigviskddelfrwglgryvqamglinedgsfvhemtrheqs
lhfqnyamlpltmiaetasrqgidlyaykengrdihsarkfvfaavknpdlikkyasepq
dtrafkpgrgdlnwieyqrarfgfadelgfmtvpifdprtggsatllaykpqg

    Sequence, based on observed residues (ATOM records): (download) 
    >4f13A (A:)
shpfdqavvkdptasyvdvkarrtflqsgqlddrlkaalpkeydctteatpnpqqgemvi
prrylsgnhgpvnpdyepvvtlyrdfekisatlgnlyvatgkpvyatcllnmldkwakad
allnydpksqswyqvewsaataafalstmmaepnvdtaqrervvkwlnrvarhqtsfpgg
dtsccnnhsywrgqeatiigviskddelfrwglgryvqamglinedgsfvhemtrheqsl
hfqnyamlpltmiaetasrqgidlyaykengrdihsarkfvfaavknpdlikkyasepqd
trafkpgrgdlnwieyqrarfgfadelgfmtvpifdprtggsatllaykpqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4f13B (B:)
gshpfdqavvkdptasyvdvkarrtflqsgqlddrlkaalpkeydctteatpnpqqgemv
iprrylsgnhgpvnpdyepvvtlyrdfekisatlgnlyvatgkpvyatcllnmldkwaka
dallnydpksqswyqvewsaataafalstmmaepnvdtaqrervvkwlnrvarhqtsfpg
gdtsccnnhsywrgqeatiigviskddelfrwglgryvqamglinedgsfvhemtrheqs
lhfqnyamlpltmiaetasrqgidlyaykengrdihsarkfvfaavknpdlikkyasepq
dtrafkpgrgdlnwieyqrarfgfadelgfmtvpifdprtggsatllaykpqg

    Sequence, based on observed residues (ATOM records): (download) 
    >4f13B (B:)
shpfdqavvkdptasyvdvkarrtflqsgqlddrlkaalpkeydctteatpnpqqgemvi
prryvnpdyepvvtlyrdfekisatlgnlyvatgkpvyatcllnmldkwakadallnydp
ksqswyqvewsaataafalstmmaepnvdtaqrervvkwlnrvarhqtsfpggdtsccnn
hsywrgqeatiigviskddelfrwglgryvqamglinedgsfvhemtrheqslhfqnyam
lpltmiaetasrqgidlyaykengrdihsarkfvfaavknpdlikkyasepqdtrafkpg
rgdlnwieyqrarfgfadelgfmtvpifdprtggsatllaykpqg