PDB entry 4eyf

View 4eyf on RCSB PDB site
Description: Crystal structure of NDM-1 bound to hydrolyzed benzylpenicillin
Class: Hydrolase/antibiotic
Keywords: Metallo Beta Lactamase, antibiotic, Hydrolase-antibiotic complex
Deposited on 2012-05-01, released 2012-08-08
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-08-15, with a file datestamp of 2012-08-10.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.164
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-lactamase NDM-1
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4eyfa_
  • Chain 'B':
    Compound: Beta-lactamase NDM-1
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4eyfb_
  • Heterogens: PNK, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4eyfA (A:)
melpnimhpvaklstalaaalmlsgcmpgeirptigqqmetgdqrfgdlvfrqlapnvwq
htsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqilnwikqeinlpvalavvth
ahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhsltfaangwvepatapnfgpl
kvfypgpghtsdnitvgidgtdiafggclikdskakslgnlgdadtehyaasarafgaaf
pkasmivmshsapdsraaithtarmadklr

    Sequence, based on observed residues (ATOM records): (download) 
    >4eyfA (A:)
eirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvv
dtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqla
pqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggcl
ikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadkl
r

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4eyfB (B:)
melpnimhpvaklstalaaalmlsgcmpgeirptigqqmetgdqrfgdlvfrqlapnvwq
htsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqilnwikqeinlpvalavvth
ahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhsltfaangwvepatapnfgpl
kvfypgpghtsdnitvgidgtdiafggclikdskakslgnlgdadtehyaasarafgaaf
pkasmivmshsapdsraaithtarmadklr

    Sequence, based on observed residues (ATOM records): (download) 
    >4eyfB (B:)
eirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvv
dtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqla
pqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggcl
ikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadkl
r