PDB entry 4elk
View 4elk on RCSB PDB site
Description: Crystal structure of the Hy19.3 type II NKT TCR
Class: immune system
Keywords: antigen presentation, type II NKT cells, IMMUNE SYSTEM
Deposited on
2012-04-10, released
2012-07-25
The last revision prior to the SCOPe 2.03 freeze date was dated
2013-01-09, with a file datestamp of
2013-01-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.19
AEROSPACI score: 0.42
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hy19.3 TCR alpha chain (mouse variable domain, human constant domain)
Species: Mus musculus [TaxId:10090]
Gene: Valpha1 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4elka1, d4elka2 - Chain 'B':
Compound: Hy19.3 TCR beta chain (mouse variable domain, human constant domain)
Species: Mus musculus [TaxId:10090]
Gene: Vbeta16 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4elkb1, d4elkb2 - Chain 'C':
Compound: Hy19.3 TCR alpha chain (mouse variable domain, human constant domain)
Species: Mus musculus [TaxId:10090]
Gene: Valpha1 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4elkc1, d4elkc2 - Chain 'D':
Compound: Hy19.3 TCR beta chain (mouse variable domain, human constant domain)
Species: Mus musculus [TaxId:10090]
Gene: Vbeta16 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4elkd1, d4elkd2 - Heterogens: ACT, FMT, MLI, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4elkA (A:)
mqqkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkeg
rftahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyiqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>4elkA (A:)
qkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkegrf
tahlnkaslhvslhirdsqpsdsalyfcaaseqnaqgltfglgtrvsvfpyiqnpdpavy
qlrdskssdksvclftdfdsqtnvsqsdsdvyitdkcvldmrsmdfksnsavawsnksdf
acanafnnsiipedtffps
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4elkB (B:)
mgpkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksk
lfkdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlrn
vtppkvslfepskaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
qpalndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgra
Sequence, based on observed residues (ATOM records): (download)
>4elkB (B:)
pkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksklf
kdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlrnvt
ppkvslfepskaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqp
alndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
ra
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4elkC (C:)
mqqkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkeg
rftahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyiqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>4elkC (C:)
qkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkegrf
tahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyiqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqsdsdvyitdkcvldmrsmdfksnsavawsnkd
facanafnnsiipedtffpspes
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4elkD (D:)
mgpkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksk
lfkdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlrn
vtppkvslfepskaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
qpalndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgra
Sequence, based on observed residues (ATOM records): (download)
>4elkD (D:)
gpkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmekskl
fkdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlrnv
tppkvslfepskaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeq
palndsryslssrlrvsatfwqnprnhfrcqvqfyglsndewtqdrakpvtqivsaeawg
ra