PDB entry 4ek2
View 4ek2 on RCSB PDB site
Description: The structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to deoxyadenosine monophosphate
Class: transferase
Keywords: Seattle Structural Genomics Center for Infectious Disease, SSGCID, dAMP, NIAID, National Institute of Allergy and Infectious Diseases, TRANSFERASE
Deposited on
2012-04-09, released
2012-05-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2013-10-30, with a file datestamp of
2013-10-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.192
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Burkholderia thailandensis [TaxId:271848]
Gene: ndk, BTH_I2231
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4ek2a1, d4ek2a2 - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Burkholderia thailandensis [TaxId:271848]
Gene: ndk, BTH_I2231
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4ek2b_ - Heterogens: CL, DMS, DA, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4ek2A (A:)
gpgsmalertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhae
rpffkdlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanav
hgsdapetarveiafffpemnvysr
Sequence, based on observed residues (ATOM records): (download)
>4ek2A (A:)
smalertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhaerpf
fkdlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanavhgs
dapetarveiafffpemnvysr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4ek2B (B:)
gpgsmalertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhae
rpffkdlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanav
hgsdapetarveiafffpemnvysr
Sequence, based on observed residues (ATOM records): (download)
>4ek2B (B:)
alertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhaerpffk
dlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanavhgsda
petarveiafffpemnvysr