PDB entry 4ek2

View 4ek2 on RCSB PDB site
Description: The structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to deoxyadenosine monophosphate
Class: transferase
Keywords: Seattle Structural Genomics Center for Infectious Disease, SSGCID, dAMP, NIAID, National Institute of Allergy and Infectious Diseases, TRANSFERASE
Deposited on 2012-04-09, released 2012-05-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.192
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Burkholderia thailandensis [TaxId:271848]
    Gene: ndk, BTH_I2231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2SWE7 (4-144)
      • expression tag (3)
    Domains in SCOPe 2.08: d4ek2a1, d4ek2a2
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Burkholderia thailandensis [TaxId:271848]
    Gene: ndk, BTH_I2231
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ek2b_
  • Heterogens: CL, DMS, DA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ek2A (A:)
    gpgsmalertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhae
    rpffkdlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanav
    hgsdapetarveiafffpemnvysr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ek2A (A:)
    smalertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhaerpf
    fkdlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanavhgs
    dapetarveiafffpemnvysr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ek2B (B:)
    gpgsmalertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhae
    rpffkdlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanav
    hgsdapetarveiafffpemnvysr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ek2B (B:)
    alertlsiikpdavaknvigqiysrfenaglkivaarmahlsradaekfyavhaerpffk
    dlvefmisgpvmiqvlegedailknrdlmgatdpkkaekgtiradfadsidanavhgsda
    petarveiafffpemnvysr