PDB entry 4ei6

View 4ei6 on RCSB PDB site
Description: Structure of XV19 Valpha1-Vbeta16 Type-II Natural Killer T cell receptor
Class: immune system
Keywords: Natural Killer T cell receptor, IMMUNE SYSTEM
Deposited on 2012-04-04, released 2012-07-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-09-05, with a file datestamp of 2012-08-31.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.209
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Valpha1 XV19 Type II Natural Killer T cell receptor (mouse variable domain, human constant domain)
    Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4EI6
    Domains in SCOPe 2.06: d4ei6a1, d4ei6a2
  • Chain 'B':
    Compound: Vbeta16 XV19 Type II Natural Killer T cell receptor (mouse variable domain, human constant domain)
    Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4EI6 (0-End)
    Domains in SCOPe 2.06: d4ei6b1, d4ei6b2
  • Chain 'C':
    Compound: Valpha1 XV19 Type II Natural Killer T cell receptor (mouse variable domain, human constant domain)
    Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4EI6
    Domains in SCOPe 2.06: d4ei6c1, d4ei6c2
  • Chain 'D':
    Compound: Vbeta16 XV19 Type II Natural Killer T cell receptor (mouse variable domain, human constant domain)
    Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4EI6
    Domains in SCOPe 2.06: d4ei6d1, d4ei6d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ei6A (A:)
    mqqkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkeg
    rftahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyiqnpd
    pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
    nksdfacanafnnsiipedtffpspess
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ei6A (A:)
    qkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkegrf
    tahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyiqnpdpa
    vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
    sdfacanafnnsiipedtffps
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ei6B (B:)
    mgpkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksk
    lfkdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlkn
    vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
    qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
    wgrad
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ei6B (B:)
    mgpkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksk
    lfkdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlkn
    vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
    qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
    wgra
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4ei6C (C:)
    mqqkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkeg
    rftahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyiqnpd
    pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
    nksdfacanafnnsiipedtffpspess
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ei6C (C:)
    qkvqqspeslsvpeggmaslnctssdrnfqyfwwyrqhsgegpkalmsifsdgdkkegrf
    tahlnkaslhvslhirdsqpsdsalyfcaaseqnnyaqgltfglgtrvsvfpyipdpavy
    qlrdssvclftdfdsqtnvsqssdvyitdkcvldmrsmdfksnsavawsnfacanafnns
    iipedtffp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4ei6D (D:)
    mgpkvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksk
    lfkdqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlkn
    vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
    qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
    wgrad
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ei6D (D:)
    kvlqipshqiidmgqmvtlncdpvsnhlyfywykqilgqqmeflvnfyngkvmeksklfk
    dqfsverpdgsyftlkiqptaledsavyfcassfwgayaeqffgpgtrltvledlknvfp
    pevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpa
    lndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
    a