PDB entry 4e4g

View 4e4g on RCSB PDB site
Description: Crystal structure of putative Methylmalonate-semialdehyde dehydrogenase from Sinorhizobium meliloti 1021
Class: oxidoreductase
Keywords: STRUCTURAL GENOMICS, CRYSTAL STRUCTURE,PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, OXIDOREDUCTASE
Deposited on 2012-03-12, released 2012-03-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-08-29, with a file datestamp of 2012-08-24.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.192
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4ga_
  • Chain 'B':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4gb_
  • Chain 'C':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4gc_
  • Chain 'D':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4gd_
  • Chain 'E':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4ge_
  • Chain 'F':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4gf_
  • Chain 'G':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92RW4 (23-End)
      • expression tag (22)
    Domains in SCOPe 2.05: d4e4gg_
  • Chain 'H':
    Compound: Methylmalonate-semialdehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: iolA, mmsA, R00726, SMc00781
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4e4gh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4e4gA (A:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gA (A:)
    myelghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaat
    npqrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqk
    seftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdps
    vpirlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamn
    gkraqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlid
    klvpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgye
    nghfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdg
    daardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktits
    rwpsgikd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4e4gB (B:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gB (B:)
    yelghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaatn
    pqrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqks
    eftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdpsv
    pirlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamng
    kraqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlidk
    lvpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgyen
    ghfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdgd
    aardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktitsr
    wpsgik
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4e4gC (C:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gC (C:)
    myelghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaat
    npqrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqk
    seftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdps
    vpirlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamn
    gkraqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlid
    klvpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgye
    nghfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdg
    daardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktits
    rwpsgi
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4e4gD (D:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gD (D:)
    myelghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaat
    npqrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqk
    seftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdps
    vpirlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamn
    gkraqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlid
    klvpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgye
    nghfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdg
    daardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktits
    rwpsgikd
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4e4gE (E:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gE (E:)
    yelghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaatn
    pqrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqks
    eftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdpsv
    pirlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamng
    kraqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlidk
    lvpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgyen
    ghfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdgd
    aardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktitsr
    wpsgik
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4e4gF (F:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gF (F:)
    elghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaatnp
    qrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqkse
    ftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdpsvp
    irlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamngk
    raqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlidkl
    vpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgyeng
    hfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdgda
    ardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktitsrw
    psgi
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4e4gG (G:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gG (G:)
    mmyelghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaa
    tnpqrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlq
    kseftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdp
    svpirlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaam
    ngkraqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrli
    dklvpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgy
    enghfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrd
    gdaardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktit
    srwps
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4e4gH (H:)
    mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
    asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
    akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
    wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
    iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
    gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
    dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
    eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
    fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4e4gH (H:)
    elghfidgkrvagtsgrvsnifnpatgevqgtvalasdadlaaavesakaaqpkwaatnp
    qrrarvfmkfvqllndnmnelaemlsrehgktiddakgdivrglevcefvigiphlqkse
    ftegagpgidmysirqpvgigagitpfnfpgmipmwmfapaiacgnafilkpserdpsvp
    irlaelmieaglpagilnvvngdkgavdailthpdiaavsfvgstpiaryvygtaamngk
    raqcfggaknhmiimpdadldqaanaligagygsagercmaisvavpvgeetanrlidkl
    vpmveslrigpytdekadmgpvvtkeaeqrirslidsgieqgaklvvdgrdfklqgyeng
    hfiggclfddvtpdmdiykteifgpvlsvvrarnyeealslpmkheygngvaiytrdgda
    ardfasrinigmvgvnvpipvplayhsfggwksssfgdlnqhgtdsikfwtrtktitsrw
    psgik