PDB entry 4dqr

View 4dqr on RCSB PDB site
Description: Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mn2+
Class: transferase/DNA
Keywords: DNA Polymerase I, protein-DNA complex, rCTP-dG, TRANSFERASE-DNA complex
Deposited on 2012-02-16, released 2012-06-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-11-21, with a file datestamp of 2012-11-16.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.167
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Geobacillus kaustophilus [TaxId:235909]
    Gene: polA, GK2730
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5KWC1 (Start-591)
      • engineered mutation (313)
      • engineered mutation (373)
      • engineered mutation (538)
    Domains in SCOPe 2.06: d4dqra1, d4dqra2
  • Chain 'B':
    Compound: DNA (5'-d(*cp*cp*tp*gp*ap*cp*tp*cp*(doc))-3')
  • Chain 'C':
    Compound: DNA (5'-d(*cp*ap*tp*gp*gp*gp*ap*gp*tp*cp*ap*gp*g)-3')
  • Chain 'D':
    Compound: DNA polymerase
    Species: Geobacillus kaustophilus [TaxId:235909]
    Gene: polA, GK2730
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5KWC1 (Start-591)
      • engineered mutation (313)
      • engineered mutation (373)
      • engineered mutation (538)
    Domains in SCOPe 2.06: d4dqrd1, d4dqrd2
  • Chain 'E':
    Compound: DNA (5'-d(*cp*cp*tp*gp*ap*cp*tp*cp*(doc))-3')
  • Chain 'F':
    Compound: DNA (5'-d(*cp*ap*tp*gp*gp*gp*ap*gp*tp*cp*ap*gp*g)-3')
  • Heterogens: CTP, MN, SO4, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4dqrA (A:)
    mespsseeekplakmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrf
    flrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpa
    qgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpflde
    lrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagq
    efninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklq
    styiegllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpse
    sdwlifaadysqialrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrq
    akavnfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvt
    tllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahl
    llqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
    

    Sequence, based on observed residues (ATOM records): (download)
    >4dqrA (A:)
    akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
    fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
    kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
    leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
    ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
    patkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
    ialrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygi
    sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
    tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
    pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4dqrD (D:)
    mespsseeekplakmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrf
    flrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpa
    qgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpflde
    lrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagq
    efninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklq
    styiegllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpse
    sdwlifaadysqialrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrq
    akavnfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvt
    tllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahl
    llqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
    

    Sequence, based on observed residues (ATOM records): (download)
    >4dqrD (D:)
    kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqf
    vawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmk
    qyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllvel
    eqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvi
    lfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvrp
    atkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysqi
    alrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygis
    dyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdit
    srnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileap
    keemerlcrlvpevmeqavtlrvplkvdyhygstwydak
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.