PDB entry 4dki

View 4dki on RCSB PDB site
Description: Structural Insights into the Anti- Methicillin-Resistant Staphylococcus aureus (MRSA) Activity of Ceftobiprole
Class: HYDROLASE/Antibiotic
Keywords: enzyme, HYDROLASE-Antibiotic complex
Deposited on 2012-02-03, released 2012-08-01
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-10-03, with a file datestamp of 2012-09-28.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.176
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Penicillin-binding protein 2'
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: mecA, SACOL0033
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dkia1, d4dkia2, d4dkia3
  • Chain 'B':
    Compound: Penicillin-binding protein 2'
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: mecA, SACOL0033
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dkib1, d4dkib2, d4dkib3
  • Heterogens: RB6, BCT, CD, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dkiA (A:)
maskdkeinntidaiedknfkqvykdssyisksdngevemterpikiynslgvkdiniqd
rkikkvsknkkrvdaqykiktnygnidrnvqfnfvkedgmwkldwdhsviipgmqkdqsi
hienlksergkildrnnvelantgtayeigivpknvskkdykaiakelsisedyikqqmd
qnwvqddtfvplktvkkmdeylsdfakkfhlttnetesrnyplekatshllgyvgpinse
elkqkeykgykddavigkkgleklydkklqhedgyrvtivddnsntiahtliekkkkdgk
diqltidakvqksiynnmkndygsgtaihpqtgellalvstpsydvypfmygmsneeynk
ltedkkepllnkfqittspgstqkiltamiglnnktlddktsykidgkgwqkdkswggyn
vtryevvngnidlkqaiessdniffarvalelgskkfekgmkklgvgedipsdypfynaq
isnknldneilladsgygqgeilinpvqilsiysalenngninaphllkdtknkvwkkni
iskeninlltdgmqqvvnkthkediyrsyanligksgtaelkmkqgetgrqigwfisydk
dnpnmmmainvkdvqdkgmasynakisgkvydelyengnkkydide

    Sequence, based on observed residues (ATOM records): (download) 
    >4dkiA (A:)
skdkeinntidaiedknfkqvykdssyisksdngevemterpikiynslgvkdiniqdrk
ikkvsknkkrvdaqykiktnygnidrnvqfnfvkedgmwkldwdhsviipgmqkdqsihi
enlksergkildrnnvelantgtayeigivpknvskkdykaiakelsisedyikqqmdqn
wvqddtfvplktvkkmdeylsdfakkfhlttnetesrnyplekatshllgyvgpinseel
kqkeykgykddavigkkgleklydkklqhedgyrvtivddnsntiahtliekkkkdgkdi
qltidakvqksiynnmkndygsgtaihpqtgellalvstpsydvypfmygmsneeynklt
edkkepllnkfqittspgstqkiltamiglnnktlddktsykidgkgwqkdkswggynvt
ryevvngnidlkqaiessdniffarvalelgskkfekgmkklgvgedipsdypfynaqis
nknldneilladsgygqgeilinpvqilsiysalenngninaphllkdtknkvwkkniis
keninlltdgmqqvvnkthkediyrsyanligksgtaelkmkqetgrqigwfisydkdnp
nmmmainvkdvqdmasynakisgkvydelyengnkkydide

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dkiB (B:)
maskdkeinntidaiedknfkqvykdssyisksdngevemterpikiynslgvkdiniqd
rkikkvsknkkrvdaqykiktnygnidrnvqfnfvkedgmwkldwdhsviipgmqkdqsi
hienlksergkildrnnvelantgtayeigivpknvskkdykaiakelsisedyikqqmd
qnwvqddtfvplktvkkmdeylsdfakkfhlttnetesrnyplekatshllgyvgpinse
elkqkeykgykddavigkkgleklydkklqhedgyrvtivddnsntiahtliekkkkdgk
diqltidakvqksiynnmkndygsgtaihpqtgellalvstpsydvypfmygmsneeynk
ltedkkepllnkfqittspgstqkiltamiglnnktlddktsykidgkgwqkdkswggyn
vtryevvngnidlkqaiessdniffarvalelgskkfekgmkklgvgedipsdypfynaq
isnknldneilladsgygqgeilinpvqilsiysalenngninaphllkdtknkvwkkni
iskeninlltdgmqqvvnkthkediyrsyanligksgtaelkmkqgetgrqigwfisydk
dnpnmmmainvkdvqdkgmasynakisgkvydelyengnkkydide

    Sequence, based on observed residues (ATOM records): (download) 
    >4dkiB (B:)
skdkeinntidaiedknfkqvykdssyisksdngevemterpikiynslgvkdiniqdrk
ikkvsknkkrvdaqykiktnygnidrnvqfnfvkedgmwkldwdhsviipgmqkdqsihi
enlksergkildrnnvelantgtayeigivpknvskkdykaiakelsisedyikqqmdqn
wvqddtfvplktvkkmdeylsdfakkfhlttnetesrnyplekatshllgyvgpinseel
kqkeykgykddavigkkgleklydkklqhedgyrvtivddnsntiahtliekkkkdgkdi
qltidakvqksiynnmkndygsgtaihpqtgellalvstpsydvypfmygmsneeynklt
edkkepllnkfqittspgstqkiltamiglnnktlddktsykidgkgwqkdkswggynvt
ryevvngnidlkqaiessdniffarvalelgskkfekgmkklgvgedipsdypfynaqis
knldneilladsgygqgeilinpvqilsiysalenngninaphllkdtknkvwkkniisk
eninlltdgmqqvvnkthkediyrsyanligksgtaelkrqigwfisydkdnpnmmmain
vkdvmasynakisgkvydelyengnkkydide