PDB entry 4dka

View 4dka on RCSB PDB site
Description: Structure of Editosome protein
Class: RNA binding protein/immune system
Keywords: KREPA1, VHH, Single domain antibody, PROTEIN BINDING, RNA BINDING PROTEIN-IMMUNE SYSTEM complex
Deposited on 2012-02-03, released 2012-07-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-09-18, with a file datestamp of 2013-09-13.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: 0.189
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: single domain antibody VHH
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 4DKA (0-126)
    Domains in SCOPe 2.05: d4dkaa_
  • Chain 'B':
    Compound: single domain antibody VHH
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 4DKA (0-126)
    Domains in SCOPe 2.05: d4dkab_
  • Chain 'C':
    Compound: RNA-editing complex protein MP81
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RNA-editing complex protein MP81
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4dkaA (A:)
qvqlqesggglvqaggslrlscaasgrtsslysmgwfrqapgkerefvaaisrngantyy
tdsvkgrftisrdnakntvelqmnslkpedtavyycaadrfptmevvtimtneydywgqg
tqvtvss

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4dkaB (B:)
qvqlqesggglvqaggslrlscaasgrtsslysmgwfrqapgkerefvaaisrngantyy
tdsvkgrftisrdnakntvelqmnslkpedtavyycaadrfptmevvtimtneydywgqg
tqvtvss

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.