PDB entry 4die

View 4die on RCSB PDB site
Description: Crystal structure of a cytidylate kinase CmK from Mycobacterium abscessus bound to cytidine-5'-monophosphate
Class: transferase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, kinase, Mycobacterium, Cytidine monophosphate kinase, CK, TRANSFERASE
Deposited on 2012-01-30, released 2012-02-08
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-02-08, with a file datestamp of 2012-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.233
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytidylate kinase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: cmk, MAB_2371
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MB31 (6-End)
      • expression tag (3-5)
    Domains in SCOPe 2.04: d4diea_
  • Chain 'B':
    Compound: Cytidylate kinase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: cmk, MAB_2371
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MB31 (6-End)
      • expression tag (3-5)
    Domains in SCOPe 2.04: d4dieb_
  • Chain 'C':
    Compound: Cytidylate kinase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: cmk, MAB_2371
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MB31 (6-End)
      • expression tag (3-5)
    Domains in SCOPe 2.04: d4diec_
  • Chain 'D':
    Compound: Cytidylate kinase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: cmk, MAB_2371
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MB31 (6-End)
      • expression tag (3-5)
    Domains in SCOPe 2.04: d4died_
  • Heterogens: C5P, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dieA (A:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dieA (A:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvladvqrrdhldstrlrpaed
alevdtsdmtqeqvvahlldlvrt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dieB (B:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dieB (B:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrrnqrrdhldstravsplrpaedalev
dtsdmtqeqvvahlldlvrtr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4dieC (C:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dieC (C:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsekvladvqrrdhldstrav
splrpaedalevdtsdmtqeqvvahlldlvrtr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4dieD (D:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dieD (D:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrvqrrdhldstravsplrpaedalevd
tsdmtqeqvvahlldlvrtr