PDB entry 4d9l

View 4d9l on RCSB PDB site
Description: Fab structure of anti-HIV-1 gp120 V2 mAb 697
Class: immune system
Keywords: Ig, antibody, HIV-1 gp120, IMMUNE SYSTEM
Deposited on 2012-01-11, released 2012-03-21
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-04-11, with a file datestamp of 2012-04-06.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: 0.18
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'H':
  Compound: Heavy chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9L (0-115)
  • Uniprot Q6GMX6 (116-End)
• Chain 'I':
  Compound: Heavy chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9L (0-115)
  • Uniprot Q6GMX6 (116-End)
• Chain 'J':
  Compound: Heavy chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9L (0-115)
  • Uniprot Q6GMX6 (116-222)
• Chain 'K':
  Compound: Heavy chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9L (0-115)
  • Uniprot Q6GMX6 (116-End)
• Chain 'L':
  Compound: Light chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9l (0-119)
  • Uniprot Q6GMX4 (120-End)
  Domains in SCOPe 2.05: d4d9ll1, d4d9ll2
• Chain 'M':
  Compound: Light chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9l (0-119)
  • Uniprot Q6GMX4 (120-214)
  Domains in SCOPe 2.05: d4d9lm1, d4d9lm2
• Chain 'N':
  Compound: Light chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9l (0-119)
  • Uniprot Q6GMX4 (120-214)
  Domains in SCOPe 2.05: d4d9ln1, d4d9ln2
• Chain 'O':
  Compound: Light chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 4D9l (0-119)
  • Uniprot Q6GMX4 (120-214)
  Domains in SCOPe 2.05: d4d9lo1, d4d9lo2
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence, based on SEQRES records: (download)
  

  >4d9lL (L:)
  qsvltqppsvsgapgqrvtisctgsssnigahydvhwyqqlpgtapklliygnsnrpsgv
  pdrfsgsksgtsaslaitglqaedeadyycqsydsslsgyvfgtgtkvtvlgqpkanptv
  tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
  sylsltpeqwkshrsyscqvthegstvektvapte
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >4d9lL (L:)
  qsvltqppsvsgapgqrvtisctgsssnigahydvhwyqqlpgtapklliygnsnrpsgv
  pdrfsgsksgtsaslaitglqaedeadyycqsydsslsgyvfgtgtkvtvlgqpkanptv
  tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
  sylsltpeqwkshrsyscqvthegstvektvapt
  

  
  
• Chain 'M':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >4d9lM (M:)
  qsvltqppsvsgapgqrvtisctgsssnigahydvhwyqqlpgtapklliygnsnrpsgv
  pdrfsgsksgtsaslaitglqaedeadyycqsydsslsgyvfgtgtkvtvlgqpkanptv
  tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
  sylsltpeqwkshrsyscqvthegstvektvapte
  

  
  
• Chain 'N':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >4d9lN (N:)
  qsvltqppsvsgapgqrvtisctgsssnigahydvhwyqqlpgtapklliygnsnrpsgv
  pdrfsgsksgtsaslaitglqaedeadyycqsydsslsgyvfgtgtkvtvlgqpkanptv
  tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
  sylsltpeqwkshrsyscqvthegstvektvapte
  

  
  
• Chain 'O':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >4d9lO (O:)
  qsvltqppsvsgapgqrvtisctgsssnigahydvhwyqqlpgtapklliygnsnrpsgv
  pdrfsgsksgtsaslaitglqaedeadyycqsydsslsgyvfgtgtkvtvlgqpkanptv
  tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
  sylsltpeqwkshrsyscqvthegstvektvapte