PDB entry 4d8f

View 4d8f on RCSB PDB site
Description: Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 1 - high Mn)
Class: oxidoreductase
Keywords: iron, manganese, ribonucleotide reductase, metalloenzyme, OXIDOREDUCTASE
Deposited on 2012-01-10, released 2012-02-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.188
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonucleoside-diphosphate reductase subunit beta
    Species: Chlamydia trachomatis [TaxId:813]
    Gene: CT_828, nrdB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84835 (20-End)
      • expression tag (13-19)
    Domains in SCOPe 2.06: d4d8fa1, d4d8fa2
  • Chain 'B':
    Compound: Ribonucleoside-diphosphate reductase subunit beta
    Species: Chlamydia trachomatis [TaxId:813]
    Gene: CT_828, nrdB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84835 (20-End)
      • expression tag (10-19)
    Domains in SCOPe 2.06: d4d8fb1, d4d8fb2
  • Chain 'C':
    Compound: Ribonucleoside-diphosphate reductase subunit beta
    Species: Chlamydia trachomatis [TaxId:813]
    Gene: CT_828, nrdB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84835 (20-End)
      • expression tag (14-19)
    Domains in SCOPe 2.06: d4d8fc1, d4d8fc2
  • Chain 'D':
    Compound: Ribonucleoside-diphosphate reductase subunit beta
    Species: Chlamydia trachomatis [TaxId:813]
    Gene: CT_828, nrdB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84835 (20-End)
      • expression tag (18-19)
    Domains in SCOPe 2.06: d4d8fd1, d4d8fd2
  • Heterogens: FE, MN, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4d8fA (A:)
mgsshhhhhhssglvprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwaw
ehylngcannwlpteipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlai
fkhvtnpearqyllrqafeeavhthtflyiceslgldekeifnayneraaikakddfqme
itgkvldpnfrtdsveglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqy
qyilrdetihlnfgidlingikeenpeiwtpelqqeivelikravdleieyaqdclprgi
lglrasmfidyvqhiadrrleriglkpiyhtknpfpwmsetidlnkeknffetrvieyqh
aasltw

    Sequence, based on observed residues (ATOM records): (download) 
    >4d8fA (A:)
lvprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwawehylngcannwlp
teipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlaifkhvtnpearqyl
lrqafeeavhthtflyiceslgldekeifnayneraaikakddfqmeitgkvldpnfrtd
sveglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqyqyilrdetihlnf
gidlingikeenpeiwtpelqqeivelikravdleieyaqdclprgilglrasmfidyvq
hiadrrleriglkpiyhtknpfpwmse

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4d8fB (B:)
mgsshhhhhhssglvprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwaw
ehylngcannwlpteipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlai
fkhvtnpearqyllrqafeeavhthtflyiceslgldekeifnayneraaikakddfqme
itgkvldpnfrtdsveglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqy
qyilrdetihlnfgidlingikeenpeiwtpelqqeivelikravdleieyaqdclprgi
lglrasmfidyvqhiadrrleriglkpiyhtknpfpwmsetidlnkeknffetrvieyqh
aasltw

    Sequence, based on observed residues (ATOM records): (download) 
    >4d8fB (B:)
ssglvprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwawehylngcann
wlpteipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlaifkhvtnpear
qyllrqafeeavhthtflyiceslgldekeifnayneraaikakddfqmeitgkvldpnf
rtdsveglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqyqyilrdetih
lnfgidlingikeenpeiwtpelqqeivelikravdleieyaqdclprgilglrasmfid
yvqhiadrrleriglkpiyhtknpfpwmsetidl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4d8fC (C:)
mgsshhhhhhssglvprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwaw
ehylngcannwlpteipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlai
fkhvtnpearqyllrqafeeavhthtflyiceslgldekeifnayneraaikakddfqme
itgkvldpnfrtdsveglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqy
qyilrdetihlnfgidlingikeenpeiwtpelqqeivelikravdleieyaqdclprgi
lglrasmfidyvqhiadrrleriglkpiyhtknpfpwmsetidlnkeknffetrvieyqh
aasltw

    Sequence, based on observed residues (ATOM records): (download) 
    >4d8fC (C:)
vprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwawehylngcannwlpt
eipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlaifkhvtnpearqyll
rqafeeavhthtflyiceslgldekeifnayneraaikakddfqmeitgkvldpnfrtds
veglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqyqyilrdetihlnfg
idlingikeenpeiwtpelqqeivelikravdleieyaqdclprgilglrasmfidyvqh
iadrrleriglkpiyhtknpfpwm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4d8fD (D:)
mgsshhhhhhssglvprgshmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwaw
ehylngcannwlpteipmgkdielwksdrlsederrvillnlgffstaeslvgnnivlai
fkhvtnpearqyllrqafeeavhthtflyiceslgldekeifnayneraaikakddfqme
itgkvldpnfrtdsveglqefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqy
qyilrdetihlnfgidlingikeenpeiwtpelqqeivelikravdleieyaqdclprgi
lglrasmfidyvqhiadrrleriglkpiyhtknpfpwmsetidlnkeknffetrvieyqh
aasltw

    Sequence, based on observed residues (ATOM records): (download) 
    >4d8fD (D:)
shmqadildgkqkrvnlnskrlvncnqvdvnqlvpikykwawehylngcannwlpteipm
gkdielwksdrlsederrvillnlgffstaeslvgnnivlaifkhvtnpearqyllrqaf
eeavhthtflyiceslgldekeifnayneraaikakddfqmeitgkvldpnfrtdsvegl
qefvknlvgyyiimegiffysgfvmilsfhrqnkmigigeqyqyilrdetihlnfgidli
ngikeenpeiwtpelqqeivelikravdleieyaqdclprgilglrasmfidyvqhiadr
rleriglkpiyhtknpfpwmsetidlnkek