PDB entry 4d6f

View 4d6f on RCSB PDB site
Description: Crystal structure of a family 98 glycoside hydrolase catalytic module (Sp3GH98) in complex with the type 1 blood group A-tetrasaccharide (E558A, X01 mutant)
Class: hydrolase
Keywords: hydrolase, blood group antigen
Deposited on 2014-11-11, released 2014-11-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycoside hydrolase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5LBQ0 (0-582)
      • engineered mutation (137-138)
      • engineered mutation (171)
      • expression tag (583-585)
    Domains in SCOPe 2.08: d4d6fa1, d4d6fa2, d4d6fa3
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4d6fA (A:)
evdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhp
ddlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstsw
idkmyqkypnlhgifstasywiwandienkaadylkvsaknggyfiwaeqnvgsaiekaf
gkngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwk
wyetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnn
kesllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtp
lymtgrynvipaipgvlktdklkesvsssriqikeitspefsstqarkeylnklypmnye
gdifaqkldnrwfvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnln
nfrtnkdslwsnaqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidkl
ptihslsgtnnsydqpslnfdqknhmvtitinsngnlefelhflehtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4d6fA (A:)
evdkrreinnehpllmmplyangeefnqgkytfwggdtltgkwenipddlkpytviqlhp
ddlpkrdgaardfyehmleeaakyvnpktgknepipviltvytagnmpyytsahwlstsw
idkmyqkypnlhgifstasywiwandienkaadylkvsaknggyfiwaeqnvgsaiekaf
gkngkiafqksvdkywknlifmfkntpaaegndsttesymkglwlsnhtyqwgglmdtwk
wyetgkwklfasgnigksqgdrqwltepesmlgeealgvylnggvvynfehpaytygvnn
kesllfsevikeffryviahpapskekvledtkvfihgdysnkgngkffvnvntdreqtp
lymtgrynvipaipgvlktdklkesvsssriqikeitspefsstqarkeylnklypmnye
gdifaqkldnrwfvynykvnenvkqtgklkfnslemnvefephtygiferisnglkvnln
nfrtnkdslwsnaqdanqakklpqltkkgaikwieehyikdtqfgekrvtkivlrgidkl
ptihslsgtnnsydqpslnfdqknhmvtitinsngnlefelhfleh