PDB entry 4d0b

View 4d0b on RCSB PDB site
Description: complex of a b21 chicken MHC class I molecule and a 10mer chicken peptide
Class: immune system
Keywords: immune system
Deposited on 2014-04-25, released 2015-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-03-27, with a file datestamp of 2019-03-22.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E9LUH6 (21-290)
      • expression tag (291-297)
    Domains in SCOPe 2.08: d4d0ba1, d4d0ba2, d4d0ba3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4d0bb_
  • Chain 'C':
    Compound: peptide
    Species: GALLUS GALLUS, synthetic [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 4D0B (0-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4d0bA (A:)
mgscgalglglllaavcgaaaelhtlryirtamtdpgpglpwfvdvgyvdgelfmhynst
arravprtewiaantdqqywdretqivqgseqinrenldilrrrynqtggshtvqwmsgc
diledgtirgyhqaaydgrdfvafdkgtmtltaavpeavptkrkweeggyaeglkqylee
tcvewlrryveygkaelgrrerpevrvwgkeadgiltlscrahgfyprpivvswlkdgav
rgqdaqsggivpngdgtyhtwvtidaqpgdgdkyqcrvehaslpqpglyswrsggglndi
feaqkiewhensssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4d0bA (A:)
elhtlryirtamtdpgpglpwfvdvgyvdgelfmhynstarravprtewiaantdqqywd
retqivqgseqinrenldilrrrynqtggshtvqwmsgcdiledgtirgyhqaaydgrdf
vafdkgtmtltaavpeavptkrkweeggyaeglkqyleetcvewlrryveygkaelgrre
rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdaqsggivpngdgtyhtw
vtidaqpgdgdkyqcrvehaslpqpglyswrsgggln

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4d0bB (B:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpef

    Sequence, based on observed residues (ATOM records): (download) 
    >4d0bB (B:)
ltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwtf
qrlvhadftpssgstyackvehetlkepqvykwdpef

  • Chain 'C':
    No sequence available.