PDB entry 4amg

View 4amg on RCSB PDB site
Description: Crystal structure of the glycosyltransferase SnogD from Streptomyces nogalater
Class: transferase
Keywords: transferase, polyketide biosynthesis, gt1 family, nogalamycin
Deposited on 2012-03-09, released 2012-09-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-09-05, with a file datestamp of 2012-08-31.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: 0.22177
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: snogd
    Species: Streptomyces nogalater [TaxId:38314]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RN61 (22-End)
      • expression tag (20-21)
    Domains in SCOPe 2.08: d4amga1, d4amga2
  • Chain 'B':
    Compound: snogd
    Species: Streptomyces nogalater [TaxId:38314]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RN61 (22-End)
      • expression tag (20-21)
    Domains in SCOPe 2.08: d4amgb1, d4amgb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4amgA (A:)
mhhhhhhssgvdlgtenlyfqsmralfitspglshilptvplaqalralghevryatggd
iravaeaglcavdvspgvnyaklfvpddtdvtdpmhseglgegffaemfarvsavavdga
lrtarswrpdlvvhtptqgagpltaaalqlpcvelplgpadsepglgalirramskdyer
hgvtgeptgsvrltttppsveallpedrrspgawpmryvpynggavlpdwlppaagrrri
avtlgsidalsggiaklaplfsevadvdaefvltlgggdlallgelpanvrvvewiplga
lletcdaiihhggsgtlltalaagvpqcviphgsyqdtnrdvltglgigfdaeagslgae
qcrrllddaglreaalrvrqemsempppaetaaklvalag

    Sequence, based on observed residues (ATOM records): (download) 
    >4amgA (A:)
qsmralfitspglshilptvplaqalralghevryatggdiravaeaglcavdvspgvny
aklfvpddgegffaemfarvsavavdgalrtarswrpdlvvhtptqgagpltaaalqlpc
velplgpadsepglgalirramskdyerhgvtgeptgsvrltttppsveallpedrrspg
awpmryvpynggavlpdwlppaagrrriavtlgsidsggiaklaplfsevadvdaefvlt
lgggdlallgelpanvrvvewiplgalletcdaiihhggsgtlltalaagvpqcviphqd
tnrdvltglgigfdaeagslgaeqcrrllddaglreaalrvrqemsempppaetaaklva
la

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4amgB (B:)
mhhhhhhssgvdlgtenlyfqsmralfitspglshilptvplaqalralghevryatggd
iravaeaglcavdvspgvnyaklfvpddtdvtdpmhseglgegffaemfarvsavavdga
lrtarswrpdlvvhtptqgagpltaaalqlpcvelplgpadsepglgalirramskdyer
hgvtgeptgsvrltttppsveallpedrrspgawpmryvpynggavlpdwlppaagrrri
avtlgsidalsggiaklaplfsevadvdaefvltlgggdlallgelpanvrvvewiplga
lletcdaiihhggsgtlltalaagvpqcviphgsyqdtnrdvltglgigfdaeagslgae
qcrrllddaglreaalrvrqemsempppaetaaklvalag

    Sequence, based on observed residues (ATOM records): (download) 
    >4amgB (B:)
qsmralfitspglshilptvplaqalralghevryatggdiravaeaglcavdvspgvny
aklfvpddpmhseglgegffaemfarvsavavdgalrtarswrpdlvvhtptqgagplta
aalqlpcvelplgpadsepglgalirramskdyerhgvtgeptgsvrltttppsveallp
edrrspgawpmryvpynggavlpdwlppaagrrriavtlgsidalsggiaklaplfseva
dvdaefvltlgggdlallgelpanvrvvewiplgalletcdaiihhggsgtlltalaagv
pqcviphgtnrdvltglgigfdaeagslgaeqcrrllddaglreaalrvrqemsempppa
etaaklvala