PDB entry 4acb

View 4acb on RCSB PDB site
Description: crystal structure of translation elongation factor selb from methanococcus maripaludis in complex with the GTP analogue gppnhp
Class: translation
Keywords: selenocysteine, translation, secis element, ef-sec, sec-tRNA(sec)
Deposited on 2011-12-14, released 2012-11-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-11-07, with a file datestamp of 2012-11-02.
Experiment type: XRAY
Resolution: 3.34 Å
R-factor: 0.1809
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8J307 (14-481)
      • expression tag (13)
    Domains in SCOPe 2.06: d4acba1, d4acba2, d4acba3, d4acba4, d4acba5
  • Chain 'B':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4acbb1, d4acbb2, d4acbb3, d4acbb4
  • Chain 'C':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8J307 (14-481)
      • expression tag (11-13)
    Domains in SCOPe 2.06: d4acbc1, d4acbc2, d4acbc3, d4acbc4, d4acbc5
  • Chain 'D':
    Compound: translation elongation factor selb
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4acbd1, d4acbd2, d4acbd3, d4acbd4
  • Heterogens: GNP, MG, GDP, SO4, DXC, 5GP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4acbA (A:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4acbA (A:)
hmdfkninlgifghidhgkttlskvlteitidigfsafklenyritlvdapghadlirav
vsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemim
ksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpi
kgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvd
akqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfk
kvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricghgli
eefkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdivgkik
gtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4acbB (B:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4acbB (B:)
mdfkninlgifghidhgkttlskvlteiakrgitidigfsafklenyritlvdapghadl
iravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrt
emimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldh
afpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmai
qgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpava
vpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricg
hglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdiv
gkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4acbC (C:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4acbC (C:)
rphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafkle
nyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivv
itksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnae
iirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfke
svmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkm
kvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvl
itrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaae
kligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4acbD (D:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4acbD (D:)
dfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafklenyri
tlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitks
dnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirn
tesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvme
akagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhl
nvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrl
dlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaaeklig
eeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg