PDB entry 3wwk

View 3wwk on RCSB PDB site
Description: Crystal structure of CLEC-2 in complex with rhodocytin
Class: sugar binding protein
Keywords: C-type lectin fold, Carbohydrate binding, Podoplanin, Rhodocytin, SUGAR BINDING PROTEIN
Deposited on 2014-06-20, released 2014-10-22
The last revision prior to the SCOPe 2.04 freeze date was dated 2014-10-22, with a file datestamp of 2014-10-17.
Experiment type: XRAY
Resolution: 2.98 Å
R-factor: 0.284
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Snaclec rhodocytin subunit alpha
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I841 (Start-135)
  Domains in SCOPe 2.04: d3wwka_
• Chain 'B':
  Compound: Snaclec rhodocytin subunit beta
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I840 (Start-145)
• Chain 'C':
  Compound: C-type lectin domain family 1 member B
  Species: Homo sapiens [TaxId:9606]
  Gene: CLEC1B, CLEC2, UNQ721/PRO1384
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P126 (Start-127)
  Domains in SCOPe 2.04: d3wwkc_
• Chain 'D':
  Compound: Snaclec rhodocytin subunit alpha
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I841 (Start-135)
  Domains in SCOPe 2.04: d3wwkd_
• Chain 'E':
  Compound: Snaclec rhodocytin subunit beta
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I840 (Start-145)
  Domains in SCOPe 2.04: d3wwke_
• Chain 'F':
  Compound: C-type lectin domain family 1 member B
  Species: Homo sapiens [TaxId:9606]
  Gene: CLEC1B, CLEC2, UNQ721/PRO1384
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P126 (Start-127)
• Chain 'G':
  Compound: Snaclec rhodocytin subunit alpha
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I841 (Start-135)
• Chain 'H':
  Compound: Snaclec rhodocytin subunit beta
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I840 (Start-145)
• Chain 'I':
  Compound: C-type lectin domain family 1 member B
  Species: Homo sapiens [TaxId:9606]
  Gene: CLEC1B, CLEC2, UNQ721/PRO1384
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P126 (Start-127)
• Chain 'J':
  Compound: Snaclec rhodocytin subunit alpha
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I841 (Start-135)
• Chain 'K':
  Compound: Snaclec rhodocytin subunit beta
  Species: Calloselasma rhodostoma [TaxId:8717]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9I840 (Start-145)
• Chain 'L':
  Compound: C-type lectin domain family 1 member B
  Species: Homo sapiens [TaxId:9606]
  Gene: CLEC1B, CLEC2, UNQ721/PRO1384
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P126 (Start-127)

PDB Chain Sequences:

• Chain 'A':
  Sequence, based on SEQRES records: (download)
  

  >3wwkA (A:)
  gledcdfgwspydqhcyqafneqktwdeaekfcraqengahlasiesngeadfvswlisq
  kdeladedyvwiglraqnkeqqcssewsdgssvsyenlidlhtkkcgalekltgfrkwvn
  yyceqmhafvckllpy
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3wwkA (A:)
  ledcdfgwspydqhcyqafneqktwdeaekfcraqengahlasiesngeadfvswlisqk
  deladedyvwiglraqnkeqqcssewsdgssvsyenllhtkkcgalekltgfrkwvnyyc
  eqmhafvckllpy
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence, based on SEQRES records: (download)
  

  >3wwkC (C:)
  gsghksspcdtnwryygdscygffrhnltweeskqyctdmnatllkidnrniveyikart
  hlirwvglsrqksnevwkwedgsvisenmfefledgkgnmncayfhngkmhptfcenkhy
  lmcerkag
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3wwkC (C:)
  spcdtnwryygdscygffrhnltweeskqyctdmnatllkidnrniveyikarthlirwv
  glsrqksnevwkwedgsvisenmfefledgkgnmncayfhngkmhptfcenkhylmcerk
  ag
  

  
  
• Chain 'D':
  Sequence, based on SEQRES records: (download)
  

  >3wwkD (D:)
  gledcdfgwspydqhcyqafneqktwdeaekfcraqengahlasiesngeadfvswlisq
  kdeladedyvwiglraqnkeqqcssewsdgssvsyenlidlhtkkcgalekltgfrkwvn
  yyceqmhafvckllpy
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3wwkD (D:)
  ledcdfgwspydqhcyqafneqktwdeaekfcraqengahlasiesngeadfvswlisqk
  deladedyvwiglraqnkeqqcssewsdgssvsyenllhtkkcgalekltgfrkwvnyyc
  eqmhafvckllpy
  

  
  
• Chain 'E':
  Sequence, based on SEQRES records: (download)
  

  >3wwkE (E:)
  mgrfifvsfgllvvflslsgtgadcpsgwssyeghcykpfnepknwadaerfcklqpkhs
  hlvsfqsaeeadfvvkltrprlkanlvwmglsniwhgcnwqwsdgarlnykdwqeqsecl
  afrgvhtewlnmdcsstcsfvckfka
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3wwkE (E:)
  dcpsgwssyeghcykpfnepknwadaerfcklqpkhshlvsfqsaeeadfvvkltrprlk
  anlvwmglsniwhgcnwqwsdgarlnykdwqeqseclafrgvhtewlnmdcsstcsfvck
  fka
  

  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.