PDB entry 3w9e

View 3w9e on RCSB PDB site
Description: Structure of Human Monoclonal Antibody E317 Fab Complex with HSV-2 gD
Class: viral protein/immune system
Keywords: IgG fold, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2013-04-03, released 2013-10-02
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-10-02, with a file datestamp of 2013-09-27.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.206
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antibody fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3W9E (0-221)
  • Chain 'B':
    Compound: antibody fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3W9E (0-End)
    Domains in SCOPe 2.04: d3w9eb1, d3w9eb2
  • Chain 'C':
    Compound: Envelope glycoprotein D
    Species: Human herpesvirus 2 [TaxId:10315]
    Gene: gD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3w9ec_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3w9eB (B:)
    eivltqspgtlslspgeratlscrasqsvtssqlawyqqkpgqaprllisgasnratgip
    drfsgsgsgtdftltisrlepedfavyycqqygssptfgggtkveikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhklyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >3w9eB (B:)
    eivltqspgtlslspgeratlscrasqsvtssqlawyqqkpgqaprllisgasnratgip
    drfsgsgsgtdftltisrlepedfavyycqqygssptfgggtkveikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhklyacevthqglsspvtksfnr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3w9eC (C:)
    mgrltsgvgtaallvvavglrvvcakyaladpslkmadpnrfrgknlpvldqltdppgvk
    rvyhiqpsledpfqppsipitvyyavleracrsvllhapseapqivrgasdearkhtynl
    tiawyrmgdncaipitvmeytecpynkslgvcpirtqprwsyydsfsavsednlgflmha
    pafetagtylrlvkindwteitqfilehrarasckyalplrippaacltskayqqgvtvd
    sigmlprfipenqrtvalyslkiagwhgpkppytstllppelsdttnatqpelvpedped
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3w9eC (C:)
    ldqltdppgvkrvyhiqpsledpfqppsipitvyyavleracrsvllhapseapqivrga
    sdearkhtynltiawyrmgdncaipitvmeytecpynkslgvcpirtqprwsyydsfsav
    sednlgflmhapafetagtylrlvkindwteitqfilehrarasckyalplrippaaclt
    skayqqgvtvdsigmlprfipenqrtvalyslkiagwhgpkppytstll