PDB entry 3vr2

View 3vr2 on RCSB PDB site
Description: Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]
Class: hydrolase
Keywords: V-ATPase, Enterococcus hirae, Rotary motor, P-loop, Hydrolase, Na(+)-ATPase, ATP Binding
Deposited on 2012-04-03, released 2013-01-16
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-02-06, with a file datestamp of 2013-02-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.201
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: V-type sodium ATPase subunit B
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vr2d1, d3vr2d2, d3vr2d3
  • Chain 'E':
    Compound: V-type sodium ATPase subunit B
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vr2e1, d3vr2e2, d3vr2e3
  • Chain 'F':
    Compound: V-type sodium ATPase subunit B
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vr2f1, d3vr2f2, d3vr2f3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3vr2D (D:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr2D (D:)
yrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsgin
lknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiardyp
defiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfaai
gitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmhvl
vimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqipil
tmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktred
haatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrtit
etldlgwellamlprtelrikddlldk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3vr2E (E:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr2E (E:)
ikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegts
ginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiar
dypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvf
aaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgm
hvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqi
piltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagkt
redhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnr
titetldlgwellamlprtelrikddlld

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3vr2F (F:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr2F (F:)
eyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsgi
nlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiardy
pdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfaa
igitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmhv
lvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqipi
ltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktre
dhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrti
tetldlgwellamlprtelkrikddlldkyl