PDB entry 3vpd
View 3vpd on RCSB PDB site
Description: LysX from Thermus thermophilus complexed with AMP-PNP
Class: ligase
Keywords: ATP-dependenet amine/thiol ligase family, ATP-dependenet amine/thiol ligase, LIGASE
Deposited on
2012-02-29, released
2013-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2013-07-31, with a file datestamp of
2013-07-26.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.198
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ribosomal protein S6 modification protein
Species: Thermus thermophilus [TaxId:274]
Gene: LysX, rimK
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3vpda1, d3vpda2 - Chain 'B':
Compound: Ribosomal protein S6 modification protein
Species: Thermus thermophilus [TaxId:274]
Gene: LysX, rimK
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3vpdb1, d3vpdb2 - Heterogens: ANP, BUA, CIT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3vpdA (A:)
mlailydrirpdermlferaealglpykkvyvpalpmvlgerpealegvtvalercvsqs
rglaaaryltalgipvvnrpevieacgdkwatsvalakaglpqpktalatdreealrlme
afgypvvlkpvigswgrllakvtdraaaeallehkevlggfqhqlfyiqeyvekpgrdir
vfvvgeraiaaiyrrsahwitntarggqaencplteeiarlsvgaaeavgggvvavdlfe
sergllvnevnhtmefknsvhttgvdipgeilryawevarg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3vpdB (B:)
mlailydrirpdermlferaealglpykkvyvpalpmvlgerpealegvtvalercvsqs
rglaaaryltalgipvvnrpevieacgdkwatsvalakaglpqpktalatdreealrlme
afgypvvlkpvigswgrllakvtdraaaeallehkevlggfqhqlfyiqeyvekpgrdir
vfvvgeraiaaiyrrsahwitntarggqaencplteeiarlsvgaaeavgggvvavdlfe
sergllvnevnhtmefknsvhttgvdipgeilryawevarg
Sequence, based on observed residues (ATOM records): (download)
>3vpdB (B:)
mlailydrirpdermlferaealglpykkvyvpalpmvlgerpealegvtvalercvsqs
rglaaaryltalgipvvnrpevieacgdkwatsvalakaglpqpktalatdreealrlme
afgypvvlkpvigswgrllakvtdraaaeallehkevlggfqhqlfyiqeyvekpgrdir
vfvvgeraiaaiyrqaencplteeiarlsvgaaeavgggvvavdlfesergllvnevnht
mefknsvhttgvdipgeilryawevarg