PDB entry 3vmf
View 3vmf on RCSB PDB site
Description: Archaeal protein
Class: translation
Keywords: translation termination, TRANSLATION
Deposited on
2011-12-12, released
2012-07-25
The last revision prior to the SCOPe 2.05 freeze date was dated
2013-06-26, with a file datestamp of
2013-06-21.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.204
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Elongation factor 1-alpha
Species: Aeropyrum pernix [TaxId:272557]
Gene: tuf, APE_1844
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3vmfa1, d3vmfa2, d3vmfa3 - Chain 'B':
Compound: Peptide chain release factor subunit 1
Species: Aeropyrum pernix [TaxId:272557]
Gene: prf1, APE_1988.1
Database cross-references and differences (RAF-indexed):
- Heterogens: GTP, MG, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3vmfA (A:)
gshmaekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfaw
ildkmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsa
rkgefeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfm
kglgyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripv
qnvysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigf
avrgvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssr
iieikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnr
tvgigivtdvkpakvdikak
Sequence, based on observed residues (ATOM records): (download)
>3vmfA (A:)
kphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkmk
eerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgefe
agmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgyq
vdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvysi
pgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgvs
ksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieika
kldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgigi
vtdvkpa
- Chain 'B':
No sequence available.