PDB entry 3vim

View 3vim on RCSB PDB site
Description: Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with a new glucopyranosidic product
Class: hydrolase
Keywords: cellulases, glycosyl hydrolase, hydrolase
Deposited on 2011-10-03, released 2012-07-04
The last revision prior to the SCOPe 2.02 freeze date was dated 2012-07-04, with a file datestamp of 2012-06-29.
Experiment type: XRAY
Resolution: 1.03 Å
R-factor: 0.128
AEROSPACI score: 0.99 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-glucosidase
    Species: Neotermes koshunensis [TaxId:60586]
    Gene: NkBG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8T0W7 (Start-478)
      • engineered mutation (173)
    Domains in SCOPe 2.02: d3vima_
  • Heterogens: GBH, GOL, NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3vimA (A:)
    mdvassdtvytfpdefklgaatasyqiegawdengkgpniwdtlthehpdyvvdgatgdi
    addsyhlykedvkilkelgaqvyrfsiswarvlpeghdnivnqdgidyynnlinellang
    iepmvtmyhwdlpqalqdlggwpnlvlakysenyarvlfknfgdrvklwltfndpltfmd
    gyaseigmapsintpgigdylaahtvihahariyhlydqefraeqggkvgislninwcep
    atnsaedrascenyqqfnlglyahpifteegdypavlkdrvsrnsadegytdsrlpqfta
    eeveyirgthdflginfytallgksgvegyepsryrdsgviltqdaawpisasswlkvvp
    wgfrkelnwikneynnppvfitengfsdygglndtgrvhyytehlkemlkaihedgvnvi
    gytawslmdnfewlrgysekfgiyavdfedparpripkesakvlaeimntrkiperfrdl
    ehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3vimA (A:)
    tvytfpdefklgaatasyqiegawdengkgpniwdtlthehpdyvvdgatgdiaddsyhl
    ykedvkilkelgaqvyrfsiswarvlpeghdnivnqdgidyynnlinellangiepmvtm
    yhwdlpqalqdlggwpnlvlakysenyarvlfknfgdrvklwltfndpltfmdgyaseig
    mapsintpgigdylaahtvihahariyhlydqefraeqggkvgislninwcepatnsaed
    rascenyqqfnlglyahpifteegdypavlkdrvsrnsadegytdsrlpqftaeeveyir
    gthdflginfytallgksgvegyepsryrdsgviltqdaawpisasswlkvvpwgfrkel
    nwikneynnppvfitengfsdygglndtgrvhyytehlkemlkaihedgvnvigytawsl
    mdnfewlrgysekfgiyavdfedparpripkesakvlaeimntrkiperfrd