PDB entry 3vht

View 3vht on RCSB PDB site
Description: Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Class: fluorescent protein/protein binding
Keywords: GREEN FLUORESCENT PROTEIN, FUSION PROTEIN, ZINC FINGER, UBIQUITIN-BINDING DOMAIN, FLUORESCENT PROTEIN-PROTEIN BINDING complex
Deposited on 2011-09-06, released 2012-10-10
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-10-10, with a file datestamp of 2012-10-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.194
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • PDB 3VHT
    Domains in SCOPe 2.06: d3vhta_
  • Chain 'B':
    Compound: Green fluorescent protein, ATPase WRNIP1
    Species: Aequorea victoria, Homo sapiens [TaxId:6100, 9606]
    Gene: GFP, WHIP, WRNIP1
    Database cross-references and differences (RAF-indexed):
    • PDB 3VHT
    • Uniprot Q96S55 (Start-272)
  • Chain 'C':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vhtc_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3vhtA (A:)
    gshmskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
    ptlvttfgygvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
    tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
    ladhyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagitgs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3vhtA (A:)
    mskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
    vttfgygvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlv
    nrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqlad
    hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagitg
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vhtC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg