PDB entry 3vef

View 3vef on RCSB PDB site
Description: Rhodococcus jostii RHA1 DypB N246H variant in complex with heme
Class: oxidoreductase
Keywords: peroxidase, lignan, Dyp, OXIDOREDUCTASE
Deposited on 2012-01-07, released 2012-01-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2.64 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DypB
    Species: Rhodococcus jostii [TaxId:101510]
    Gene: DyPB, RHA1_ro02407
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0SE24
      • engineered mutation (248)
    Domains in SCOPe 2.08: d3vefa_
  • Chain 'B':
    Compound: DypB
    Species: Rhodococcus jostii [TaxId:101510]
    Gene: DyPB, RHA1_ro02407
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0SE24
      • engineered mutation (248)
    Domains in SCOPe 2.08: d3vefb_
  • Chain 'C':
    Compound: DypB
    Species: Rhodococcus jostii [TaxId:101510]
    Gene: DyPB, RHA1_ro02407
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0SE24
      • engineered mutation (248)
    Domains in SCOPe 2.08: d3vefc_
  • Heterogens: HEM, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3vefA (A:)
    gshmpgpvarlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrel
    agslscvvgvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcf
    elgrqivsalgsaatvvdevhgfryfdsrdllgfvdgtenptdddaadsaligdedpdfr
    ggsyvivqkylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddg
    vehdilrdhmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaa
    tgtlffvpsrdvleslgdepagaesapedpvepaaagpydlslkigglkgvsq
    

    Sequence, based on observed residues (ATOM records): (download)
    >3vefA (A:)
    arlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrelagslscvv
    gvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcfelgrqivs
    algsaatvvdevhgfryfdsrdllgfvdgtenptdddaadsaligdedpdfrggsyvivq
    kylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddgvehdilrd
    hmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaatgtlffvp
    srdvlesl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3vefB (B:)
    gshmpgpvarlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrel
    agslscvvgvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcf
    elgrqivsalgsaatvvdevhgfryfdsrdllgfvdgtenptdddaadsaligdedpdfr
    ggsyvivqkylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddg
    vehdilrdhmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaa
    tgtlffvpsrdvleslgdepagaesapedpvepaaagpydlslkigglkgvsq
    

    Sequence, based on observed residues (ATOM records): (download)
    >3vefB (B:)
    arlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrelagslscvv
    gvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcfelgrqivs
    algsaatvvdevhgfryfdsrdllgfvdgtenptdddaadsaligdedpdfrggsyvivq
    kylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddgvehdilrd
    hmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaatgtlffvp
    srdvleslgd
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3vefC (C:)
    gshmpgpvarlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrel
    agslscvvgvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcf
    elgrqivsalgsaatvvdevhgfryfdsrdllgfvdgtenptdddaadsaligdedpdfr
    ggsyvivqkylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddg
    vehdilrdhmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaa
    tgtlffvpsrdvleslgdepagaesapedpvepaaagpydlslkigglkgvsq
    

    Sequence, based on observed residues (ATOM records): (download)
    >3vefC (C:)
    arlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrelagslscvv
    gvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcfelgrqivs
    algsaatvvdevhgfryfdsrdllgfvdgtenptdddaadsaligdedpdfrggsyvivq
    kylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddgvehdilrd
    hmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaatgtlffvp
    srdvlesl