PDB entry 3ved

View 3ved on RCSB PDB site
Description: Rhodococcus jostii RHA1 DypB D153H variant in complex with heme
Class: oxidoreductase
Keywords: peroxidase, lignan, Dyp, OXIDOREDUCTASE
Deposited on 2012-01-07, released 2012-01-18
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-08-29, with a file datestamp of 2012-08-24.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.185
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DypB
    Species: Rhodococcus jostii [TaxId:101510]
    Gene: DyPB, RHA1_ro02407
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0SE24
      • engineered mutation (155)
    Domains in SCOPe 2.04: d3veda_
  • Chain 'B':
    Compound: DypB
    Species: Rhodococcus jostii [TaxId:101510]
    Gene: DyPB, RHA1_ro02407
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0SE24
      • engineered mutation (155)
    Domains in SCOPe 2.04: d3vedb_
  • Chain 'C':
    Compound: DypB
    Species: Rhodococcus jostii [TaxId:101510]
    Gene: DyPB, RHA1_ro02407
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0SE24
      • engineered mutation (155)
    Domains in SCOPe 2.04: d3vedc_
  • Heterogens: HEM, CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vedA (A:)
gshmpgpvarlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrel
agslscvvgvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcf
elgrqivsalgsaatvvdevhgfryfdsrdllgfvhgtenptdddaadsaligdedpdfr
ggsyvivqkylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddg
vehdilrdnmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaa
tgtlffvpsrdvleslgdepagaesapedpvepaaagpydlslkigglkgvsq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vedA (A:)
arlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrelagslscvv
gvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcfelgrqivs
algsaatvvdevhgfryfdsrdllgfvhgtenptdddaadsaligdedpdfrggsyvivq
kylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddgvehdilrd
nmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaatgtlffvp
srdvlesl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vedB (B:)
gshmpgpvarlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrel
agslscvvgvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcf
elgrqivsalgsaatvvdevhgfryfdsrdllgfvhgtenptdddaadsaligdedpdfr
ggsyvivqkylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddg
vehdilrdnmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaa
tgtlffvpsrdvleslgdepagaesapedpvepaaagpydlslkigglkgvsq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vedB (B:)
arlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrelagslscvv
gvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcfelgrqivs
algsaatvvdevhgfryfdsrdllgfvhgtenptdddaadsaligdedpdfrggsyvivq
kylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddgvehdilrd
nmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaatgtlffvp
srdvleslg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3vedC (C:)
gshmpgpvarlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrel
agslscvvgvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcf
elgrqivsalgsaatvvdevhgfryfdsrdllgfvhgtenptdddaadsaligdedpdfr
ggsyvivqkylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddg
vehdilrdnmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaa
tgtlffvpsrdvleslgdepagaesapedpvepaaagpydlslkigglkgvsq

    Sequence, based on observed residues (ATOM records): (download) 
    >3vedC (C:)
arlapqavltppsaaslflvlvagdsdddratvcdvisgidgplkavgfrelagslscvv
gvgaqfwdrvsasskpahlhpfvplsgpvhsapstpgdllfhikaarkdlcfelgrqivs
algsaatvvdevhgfryfdsrdllgfvhgtenptdddaadsaligdedpdfrggsyvivq
kylhdmsawntlsteeqervigrtklenveldddaqpsnshvtlntivdddgvehdilrd
nmafgslgeaeygtyfigyakdpavtelmlrrmflgeppgnydrvldfstaatgtlffvp
srdvleslg