PDB entry 3upq
View 3upq on RCSB PDB site
Description: Crystal structure of the pre-catalytic ternary complex of polymerase lambda with an rATP analog opposite a templating T.
Class: transferase, lyase/DNA
Keywords: DNA, Polymerase, DNA polymerase lambda, ribonucleotide incorporation, TRANSFERASE, LYASE-DNA complex
Deposited on
2011-11-18, released
2012-05-23
The last revision prior to the SCOPe 2.06 freeze date was dated
2012-09-26, with a file datestamp of
2012-09-21.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.209
AEROSPACI score: 0.45
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase lambda
Species: Homo sapiens [TaxId:9606]
Gene: POLL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3upqa1, d3upqa2, d3upqa3 - Chain 'D':
Compound: 5'-d(p*gp*cp*cp*g)-3'
- Chain 'P':
Compound: 5'-d(*cp*ap*gp*tp*ap*c)-3'
- Chain 'T':
Compound: 5'-d(*cp*gp*gp*cp*tp*gp*tp*ap*cp*tp*g)-3'
- Heterogens: ZAN, MN, NA, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3upqA (A:)
aqpssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacs
ipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsle
dirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrg
katcgdvdvlithpdgrshrgifsrlldslrqegfltddlvkgetkylgvcrlpgpgrrh
rrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvg
pgrvlptptekdvfrllglpyrepaerdw
Sequence, based on observed residues (ATOM records): (download)
>3upqA (A:)
hnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrmae
kiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqasltt
qqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvl
ithpdgrshrgifsrlldslrqegfltddlvkgetkylgvcrlpgpgrrhrrldiivvpy
sefacallyftgsahfnrsmralaktkgmslsehalstavgrvlptptekdvfrllglpy
repaerdw
- Chain 'D':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.